Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00012 ATGAATATTTTTGTGGTAGAAAAAGTGAAGATTCCTTATGATAAGCCTTACATCATATTGAAAGGAGAGGGAAAGAGAAGAACTTTTGTTGAGTGGGATGACCATGATAATACCTCACAGAGTCCTACGTTTGTAGCCATGGCTGACAACGTTGTTGTCAAATCCATGAGCTTTAGGAATTCATACAACAACCCAATAAACAGTAAAGCCATTAAGCCTGCTGTGGCAGCAATGGTGAGTGGAGACAAGTCTTACTTTTTGAGAGTTGGTTTCTTCGGTTTGCAAGACACTTTATGGGACGACAGAGGAAGACATTACTACAAGCTTTGCACCATTCAAGGTGCCATTGATTTTATCTTCGGTGCAGGCCAATCATTATTTGAGAGGTGTTCCATATCTGTGATTGGTGGAGCACTAGATCCTGGGTTACCAGGGTTCATCACAGCACAAGGGAGAACACATTCACAAGACGAAAATGGCTTTGTTTTCATTGATTCTCATGTCTTTGGAAATGGAACAACTTACTTGGGGAGGCCATGGAGAAGTCATGCTAGGGTTTTGTTTTACAAGACCAACTTCTCCAACGTTATACAACCTGCTGGTTGGGATGCATGGAAATTTGCTCCAAACGAGAGTGGCATAACATTTGCAGAGTATGGGAACTTTGGGCCTGGTTCTGACACTTCTCAAAGAGTGAGTTGGACCAAGAAGTTGGATTTAGAAACAATTCAGAATATGACAAGCACCAAGTTCATTGACACTGATGGCTGGCTTCAGAAACAACCATTCTAA 792 0.4167 MNIFVVEKVKIPYDKPYIILKGEGKRRTFVEWDDHDNTSQSPTFVAMADNVVVKSMSFRNSYNNPINSKAIKPAVAAMVSGDKSYFLRVGFFGLQDTLWDDRGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRTHSQDENGFVFIDSHVFGNGTTYLGRPWRSHARVLFYKTNFSNVIQPAGWDAWKFAPNESGITFAEYGNFGPGSDTSQRVSWTKKLDLETIQNMTSTKFIDTDGWLQKQPF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00012 263 ProSitePatterns Pectinesterase signature 2. 112 121 IPR033131 -
Vium2395g00012 263 Gene3D - 6 263 IPR012334 -
Vium2395g00012 263 Pfam Pectinesterase 6 254 IPR000070 GO:0030599|GO:0042545
Vium2395g00012 263 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 259 - -
Vium2395g00012 263 SUPERFAMILY Pectin lyase-like 7 260 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00012 Vium-Chr2395 99421 101920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00012 7 211 Carbohydrate Esterase AT2G19150 48.058 3.86e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00012 - - vum:124830376 550.436