Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00011 ATGACTTTTGGTTGGTGCTGCTCTGTGTGTGTGATATTTGTCTTGGTGGGTTTGAGAGTAGAAGAAGCTAATGGTCAGTTTTTGAGAAAAGTTGGAAGAAAACAATTAGCTTACTGGTCAATATTGGTGGATCAATCAGGGCATGGAAACTTCACCACAATACAATCTGCCATTGATGCAGTCCCTTCTCAGAACATGTATTGGGTTTCCATCATGGTGAAGGCTGGTACCTATAGAGAAAAAGTGAAGATTCCTTATGATAAGCCTTACATCATATTGAAAGGAGAGGGAAAGAGAAGAACTTTTGTTGAGTGGGATGACCATGATAATACCTCACAGAGTCCTACGTTTGTAGCCATGGCTGACAACGTTGTTGTCAAATCCATGAGCTTTAGGAATTCATACAACAACCCAATAAACAGTAAAGCCATTAAGCCTGCTGTGGCAGCAATGGTGAGTGGAGACAAGTCTTACTTTTTGAGAGTTGGTTTCTTCGGTTTGCAAGACACTTTATGGGACGACAGAGGAAGACATTACTACAAGCTTTGCACCATTCAAGGTGCCATTGATTTTATCTTCGGTGCAGGCCAATCATTATTTGAGAGGTGTTCCATATCTGTGATTGGTGGAGCACTAGATCCTGGGTTACCAGGGTTCATCACAGCACAAGGGAGAACACATTCACAAGACGAAAATGGCTTTGTTTTCATTGATTCTCATGTCTTTGGAAATGGAACAACTTACTTGGGGAGGCCATGGAGAAGTCATGCTAGGGTTTTGTTTTACAAGACCAACTTCTCCAACGTTATACAACCTGCTGGTTGGGATGCATGGAAATTTGCTCCAAACGAGAGTGGCATAACATTTGCAAAGTATGGGAACTTTGGGCCTGGTTCTGACACTTCTCAAAGAGTGAGTTGGACCAAGAAGTTGGATTTAGAAACAATTCAGAATATGACAAGCACCAAGTTCATTGACACTGATGGCTGGCTTCAGAAACAACCATTCTAA 1011 0.4184 MTFGWCCSVCVIFVLVGLRVEEANGQFLRKVGRKQLAYWSILVDQSGHGNFTTIQSAIDAVPSQNMYWVSIMVKAGTYREKVKIPYDKPYIILKGEGKRRTFVEWDDHDNTSQSPTFVAMADNVVVKSMSFRNSYNNPINSKAIKPAVAAMVSGDKSYFLRVGFFGLQDTLWDDRGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRTHSQDENGFVFIDSHVFGNGTTYLGRPWRSHARVLFYKTNFSNVIQPAGWDAWKFAPNESGITFAKYGNFGPGSDTSQRVSWTKKLDLETIQNMTSTKFIDTDGWLQKQPF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00011 336 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Vium2395g00011 336 FunFam Pectinesterase 35 335 - -
Vium2395g00011 336 Pfam Pectinesterase 41 327 IPR000070 GO:0030599|GO:0042545
Vium2395g00011 336 SUPERFAMILY Pectin lyase-like 40 333 IPR011050 -
Vium2395g00011 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 332 - -
Vium2395g00011 336 Gene3D - 38 336 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00011 Vium-Chr2395 90058 97968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00011 40 284 Carbohydrate Esterase AT2G19150 46.748 2.48e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00011 - - gmx:100819252 538.11