Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00003 ATGATGATGATGATGATGACACCAAACTTGAACCTGGAACCTGAAGAAGATTTCAAAATCTGCAGCCAAGTTGGATCAAATGAATTTCTGCAAGAAACACCACAAGATTTTATGGACAACACCAGCTCCTCCTGTCTTACAAAGACTGATCCTGATTCAGGTTCTCTGTCCCTTGACTTGACCCTCAAATTCAATCACAGTGATGAAGAGTTCAAAGATGAAAGTCACACCAACTGTGAAGTAGGAGGTGAAACTCATCCCTCAGCACTAGCAATTCCCAGAGTTTTCTCCTGTAACTATTGCCGGAGGAAATTCTTCAGCTCGCAGGCATTAGGTGGCCATCAGAATGCTCACAAAAGGGAGAGGACAATGGCAAAGCGTGCATTGAGAATGGGGATTCTCACTGAAAGGTACACAAGCTTAGCATCTCTGCCTCTGCATGGTTCTTCTTTTCGGTCACTTGGCCTTGAAGCTCATGCTGCAATCCACCAAGAACAAGTGCAGTCACTGAGGGTTCCTGAAATAGGACTTGCTGCAAAATTCGAAAAAGACTATTTTCGGACACCGATCTTCGTGGAAGATGATGATGCTGGTCTGTTTTGGCCTGGCAGCTTCAGAAAGAGAGAAGGAAGGGTTGGTTTTGGTGTTAATCTGAGCCATGATGCACATGCTTTCAATTCAAGTACTAGGTTTGTAGAAACTGCACCTCCGGCACAAACATCTGCAACTCCTGATCTCACTCTGAGGCTCTGA 753 0.4489 MMMMMMTPNLNLEPEEDFKICSQVGSNEFLQETPQDFMDNTSSSCLTKTDPDSGSLSLDLTLKFNHSDEEFKDESHTNCEVGGETHPSALAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGILTERYTSLASLPLHGSSFRSLGLEAHAAIHQEQVQSLRVPEIGLAAKFEKDYFRTPIFVEDDDAGLFWPGSFRKREGRVGFGVNLSHDAHAFNSSTRFVETAPPAQTSATPDLTLRL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00003 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Vium2395g00003 250 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vium2395g00003 250 Gene3D Classic Zinc Finger 85 143 - -
Vium2395g00003 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 166 IPR044246 GO:0009788
Vium2395g00003 250 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00003 Vium-Chr2395 32726 36010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00003 94 250 C2H2 Transcription Factor Family AT1G66140 44.565 1.44e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2395g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00003 - - gmx:100777133 343.584