Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00002 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTGGACACCGAGGGAGAGAACTCAAGGAGCAAGGTGCAGCAGCATCAGCATCGTGATTTTTCTCAGGGCAAGGAACGCCCACAAGAGAAAAAGCAAAGTTACCCGGAGAAGAAGAAGGTTGGTGTTGATGAGTTTCAGTCACCACCCTCAAAGTTTGTCTCTTCCGGGTCGCAAGAGTTGACCCTCAGCTACCTCTGTGACAACCGAAAATTGAGTCTTGTCGAGAGAGAGGTTGACGGCAGAAGCTCGGTGAAGGGCAAAGAAATTGTGGTTTATGGGAATTCAGATCAAGATCAAGACGAGTTAAGGTTTAAATCGTCTCTGGAAGAGGTGACAGCATTTAGTGCGCGACAATACTTCGACCAGGATTGTCTTCGGAGGAAGGTGGCTGTGGGGAACCAAAAGCAAGATCAGGATGAGAAATGGGTGGAGAGGGATTTCTTGAGTTTGAGTGAGTCAAGGGAGAATTCTTCGAAGAGATCCATTGATGAAGAGTGTGAGAGGGAGAGGAGTGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTCAGTCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCTTCAAACGCTTTGCAAAATGGTGACCAACTTGTTAAGCCAAAGCCTGGTATGCCATCCACAAGGCCCACAACTACTATCAATTCGTGTTCAAATGATTACACTGCAGCTTCTATGTCTCAATCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCAATCACCCGAAATTCAACCGACAATTTTGAGTATTCCCACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGCACTAATGGGTCAGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATTATTCCTTTATGCAAGGGAACAGTCACTATAAGGCTACTAGCTCGGATAACCAATCTTTTTTCCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCTGAGGGCTCCAGGGGAAAGAATTCTGAGAATATGAGAGGCTTGGAAGGTGTGGATGGTGGGAAGATGATGAAGTTTTCTAGATCAGAGAGAATTATAAGAGAAATTGTGTCTGAGTCTATCCCAACCATGGCTTTGCAATTTCAGGAGTTCACTGATGAAGTCACAACTTCAATTAAGGAACACCTGAAAGGTCTTATTGATGCACCAGAGAAGAAAGGGGAATTGATGAACCTCCAGACTCGGCTTGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCCAAGTGTCATAAAGTGCAGCTAGAGATTTTGACTGCTATCAAAATGGGGCTTGCGAGTTTCTTGTCTGGTAAGTTCCAAATCTTGGAGATGGTGGAGGTTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGCTTGCTGCCCGTTGAAGACTGTGACTGCAAGATGTGCTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCACACTGGTGTCATGCTACCTGTGCCATTCAGAAGAATCTAATCAAACCTGGGCCTATCTCGAAGGGTCCTTCTGGGACCTCTGAGATGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGCTTTGTTAAAGAGGTCTTTGTGTATTGTGCCAAGGATTGGGGCCTAGAAACATTGATGAAGGAGCTTGACTGTGTGAGGAGGATTTTCCAGGGAAGCGAAGATCGCAAAGGGAAGGAATTGCATTTTAAGATGGATGATATGCTGTCAAAACTTCAAGCTAAACTGGTTTCTCCTTCGGATGCCTGCAACTTTATCATACAGTTTTTCAGCTACACTGATGGCATGCCAGATTTTCCAGCTTCTGGTACATCCACAAAGGATTTGCCAAAATCTAAGGCTAACCTTACAGTAGACACAACAGCATCTCTTTCACAATCTACTTCTCTAATTCCAAAATATCCTTATGACATGAGCTTCACAAGGTCAAATGATCTTCAACAGAAAGAGCTCAAAACCTCCCTCTTGAGTGAGCAGAAAAAGGAGTCTGATCTGCACCTTGAGGCTTTACTAAGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCATACGGATAAAAGAGGCCGAAGCCGGAATGTTCCAGAGCAAGGCAGATGAGGCAAGGAGAGAGGCTGAGGGATTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAGGAGTATGCAGAAAGGCTTGGCAAGCTTTGCTTGCATGAGGCAGAGGAAAGGAGGAAGAAGAAATTTGAGGAACTCAATGTGTTGCAAAATTCGCACTATGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCAGCACTGGGTCTAA 2499 0.4478 MIGGKDLVPNGVDTEGENSRSKVQQHQHRDFSQGKERPQEKKQSYPEKKKVGVDEFQSPPSKFVSSGSQELTLSYLCDNRKLSLVEREVDGRSSVKGKEIVVYGNSDQDQDELRFKSSLEEVTAFSARQYFDQDCLRRKVAVGNQKQDQDEKWVERDFLSLSESRENSSKRSIDEECERERSGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVKPKPGMPSTRPTTTINSCSNDYTAASMSQSYSHPFSHNPSCSITRNSTDNFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALANYSFMQGNSHYKATSSDNQSFFPSELPARVRFEAQSEGSRGKNSENMRGLEGVDGGKMMKFSRSERIIREIVSESIPTMALQFQEFTDEVTTSIKEHLKGLIDAPEKKGELMNLQTRLGRRSDLTRETLSKCHKVQLEILTAIKMGLASFLSGKFQILEMVEVFLYMRCRNVNCKSLLPVEDCDCKMCSGNKGFCSSCMCPVCMSFDCASNTCSWVGCDVCSHWCHATCAIQKNLIKPGPISKGPSGTSEMQFHCIGCGHTSEMYGFVKEVFVYCAKDWGLETLMKELDCVRRIFQGSEDRKGKELHFKMDDMLSKLQAKLVSPSDACNFIIQFFSYTDGMPDFPASGTSTKDLPKSKANLTVDTTASLSQSTSLIPKYPYDMSFTRSNDLQQKELKTSLLSEQKKESDLHLEALLRKGGGLESLESIIRIKEAEAGMFQSKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKFEELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKQHWV 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00002 832 MobiDBLite consensus disorder prediction 19 55 - -
Vium2395g00002 832 Pfam Coiled-coil region of Oberon 693 821 IPR032535 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 486 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 767 789 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 511 531 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 728 748 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 387 409 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 584 603 IPR004082 -
Vium2395g00002 832 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 426 441 IPR004082 -
Vium2395g00002 832 CDD PHD_OBE1_like 504 563 IPR047578 -
Vium2395g00002 832 MobiDBLite consensus disorder prediction 1 68 - -
Vium2395g00002 832 MobiDBLite consensus disorder prediction 339 360 - -
Vium2395g00002 832 MobiDBLite consensus disorder prediction 169 187 - -
Vium2395g00002 832 MobiDBLite consensus disorder prediction 169 189 - -
Vium2395g00002 832 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 19 831 IPR004082 -
Vium2395g00002 832 Pfam PHD - plant homeodomain finger protein 474 598 IPR032881 -
Vium2395g00002 832 Coils Coil 782 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00002 Vium-Chr2395 14371 18534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00002 474 679 PHD Gene Family AT5G57380 23.301 7.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00002 - - gmx:100816647 1360.9