Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2395g00001 ATGGATATTATCACTCGCCGCTTCCTTCCGATCATTTCAACTTTGCTTCTCATTCTAGTTTCTCTTTCTTCATTGGCCTCAGCGTCTCTCAAAGTGGCGTTCTACGCCTCCACGTGTCCATCTGCGGAGGAAATAGTGAGAAGTACTGTAAACAAAGCCATTTCAGAAAACTCAGGCATAGCAGCTGGTCTCATAAGGATGCATTTCCACGACTGCTTTGTCAGGGGCTGCGATGCTTCCGTGTTGCTAGCATCTACCCAGGGTAACCCAGCAGAAAGAGACCATTTTGCCAACAACCCAAGCTTGCGTGGGTTCGAGGTCATTGAGGACGCCAAGGCCCAGTTGGAGGCTGCATGTCCTCAGACGGTGTCGTGCGCAGACATATTGGCCTTGGCAGCAAGAGACAGTGTTCTTAAAGTGGGTGGCATAAACTACGACGTTCCAACAGGACGCAGAGACGGTCTTGTCTCCGTGGCCGATGAAGCGGCGGAGAATCTGCCTGCACCAACCCTGAGCGCCGATGAGCTTGTGAGTAGGTTTTCACGAAAGGGTTTGTCTGCAGACGAAATGGTGACACTTTCGGGAGCCCATTCCATTGGTGTGTCGCATTGTTCTTCCTTCTCTAAGCGGTTGTACTCTTTCAATCAGACCTTGCCGCAAGACCCATCGATGGAGTCTTCCTACGCTGAAACCTTGAAAACAAAGTGTCCTGCGCCACCTTCCATCTCAGACCCAACCGTGTCTTTTGATCCTTCCACTCCCATTCGTTTGGACACCAAATACTACGATGGATTGATCAACCACCGAGGCTTGCTCACATCGGATCAGACGCTGTTCACCTCTCAATCCACCCGGGAAATGGTTCTCGGCAATGCCAACGATCCTGCGAATTGGTCTCAGAAGTTTGCCAAGGCAATGGTTCAAATGGGTTCCATAGACGTCCTCACTGGCTCCAACGGCGAGATCAGGAAACATTGCACCTTTGTTAATTAA 993 0.5055 MDIITRRFLPIISTLLLILVSLSSLASASLKVAFYASTCPSAEEIVRSTVNKAISENSGIAAGLIRMHFHDCFVRGCDASVLLASTQGNPAERDHFANNPSLRGFEVIEDAKAQLEAACPQTVSCADILALAARDSVLKVGGINYDVPTGRRDGLVSVADEAAENLPAPTLSADELVSRFSRKGLSADEMVTLSGAHSIGVSHCSSFSKRLYSFNQTLPQDPSMESSYAETLKTKCPAPPSISDPTVSFDPSTPIRLDTKYYDGLINHRGLLTSDQTLFTSQSTREMVLGNANDPANWSQKFAKAMVQMGSIDVLTGSNGEIRKHCTFVN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2395g00001 330 CDD secretory_peroxidase 31 329 IPR033905 GO:0004601|GO:0042744
Vium2395g00001 330 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 Pfam Peroxidase 46 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 FunFam Peroxidase 33 175 - -
Vium2395g00001 330 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Vium2395g00001 330 Gene3D - 33 330 - -
Vium2395g00001 330 Gene3D Peroxidase, domain 2 167 309 - -
Vium2395g00001 330 PANTHER PEROXIDASE 25-RELATED 20 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Vium2395g00001 330 ProSiteProfiles Plant heme peroxidase family profile. 29 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 SUPERFAMILY Heme-dependent peroxidases 30 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium2395g00001 330 FunFam Peroxidase 167 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2395g00001 Vium-Chr2395 1555 2625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2395g00001 8 330 Peroxidase AT1G05260 46.526 1.41e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2395g00001 K00430 - gmx:100815350 520.005