Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium238g00002 ATGTGGAAGTATGATTTGCTACCATCTAACCAGAGAGGCACAGTAGAAGCAGAAGTAGCACTGATGTCATGGAGGAACTTGGTGAACAGAGTAAAGCTTTTCATACGAGGAAGAAGACAATTCAACAATTACAAAACTGCTTCTAAATTTACGGAATCATGCAACTGGTTTACAGACGAAAGAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTATGTTGCGAACGTGAACTTTTCGGGAAGTCTCAGTCATCTTTCGAATGAACTAGGATATCTTGTTTGGTACAGATATCCGTATGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAATCTTAAGTAAGAGCAGTATTCAACGACTGTGGGAAGGCACAAAGCCGTTACCCAATTTGAAGCGTTTGGATCTCTCTTTTTGCGAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAACGGATAAATCTTCAAGGATGCGTAAAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTGTTTTGAATTTGAGACACTGCAAAAAACTAGTAATCTTATCCAATATTATATTGGGCCTGAATTCTCTTAAATATCTGGATGTCTTACTAGATGAAACAAGGAACACAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCGATCTAAGCTTCTGTAGCTTAGTTGAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAGAGAGGCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTTTAGACTGTCTTTTTTAAACCTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTTAGAACATTTCAAGCTGTCGAGAGTCTCAGCTCCAATACTTGTTTGGCCTTATTTATTGAGTTGTAAAAGTACAGGATTAATCATTTTCGGCTGCCCAGAATTAGTTGAGAATGAACTGTGCATTACAAAGAGTTTTTCATGGGCAATTCAAATTGTTGAGGCGACCTACCACTACGCGACCTACTACGACCAGGCGACCTACCGATGGCTATTCCCAGAAAGTATTATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATAGAATACCTGGACAAAGAAAACATAACCGTTGATCCACCTCCCGTTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCGTAATATTTCGTCTAGACCATGAAGAAATTCCAATGGATTTTAGAAGAGATCACATGTGGTTACATTATGAAGAGGTTTCTATGGACGAACGTGGTATTCATCATTATCCTTTCAGGTTGAGGTCGATTATCTCATTGTTGGCTTACGAGGATTTTGTTACGGCGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGATGCATTGTGCAAATTTGACAGCTCGGAAGCGCAAGACGTAA 1557 0.3969 MWKYDLLPSNQRGTVEAEVALMSWRNLVNRVKLFIRGRRQFNNYKTASKFTESCNWFTDERIKADGLSKIKHLKLLYVANVNFSGSLSHLSNELGYLVWYRYPYECLPQSFQPHKLVELILSKSSIQRLWEGTKPLPNLKRLDLSFCESLVEMPDVAEALNLERINLQGCVKLQKLNPSIGSLRKLVVLNLRHCKKLVILSNIILGLNSLKYLDVLLDETRNTEHLISCLSPSSPLSCLCELDLSFCSLVEIPDYIGKLRCLERLNLEGNNFVKLPNLKDLFRLSFLNLQDCKRLKYLPDLPSRTVLPLEHFKLSRVSAPILVWPYLLSCKSTGLIIFGCPELVENELCITKSFSWAIQIVEATYHYATYYDQATYRWLFPESIIPGSQIPSLFNNEFVNVDIEYLDKENITVDPPPVPHDNNFIGVLCCVIFRLDHEEIPMDFRRDHMWLHYEEVSMDERGIHHYPFRLRSIISLLAYEDFVTADVKKFQYRWVNEQDLINLKMMHCANLTARKRKT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium238g00002 518 ProSiteProfiles Leucine-rich repeat profile. 261 282 IPR001611 GO:0005515
Vium238g00002 518 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 61 210 IPR044974 GO:0006952
Vium238g00002 518 SUPERFAMILY L domain-like 65 345 - -
Vium238g00002 518 Gene3D Ribonuclease Inhibitor 217 356 IPR032675 -
Vium238g00002 518 Gene3D Ribonuclease Inhibitor 50 215 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium238g00002 Vium-Chr238 2008 4676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium238g00002 85 302 WRKY Transcription Factor Family AT5G45050 35.498 9.86e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium238g00002 - - vum:124847783 764.222