Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium238g00001 ATGCCAGATGTAGCAGAGGCCCTAAATCTTGAACGGATAAATCTTCAAGGATGCGTAAAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTGTTTTGAATTTGAGACACTGCAAAAAACTAGTAATCTTATCCAATATTATATTGGGCCTGAATTCTCTTAAATATCTGGATGTCTTACTAGATGAAACAAGGAACACAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCGATCTAAGCTTCTGTAGCTTAGTTGAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAGAGAGTCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTTTAGACTGTCTTTTTTAAACCTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTTAGAACATTTCAAGCTGTCGAGAGTCTCAGCTCCAATACTTGTTTGGCCTTATTTATTGAGTTGTAAAAGTACAGGATTAATCATTTTCGGCTGCCCAGAATTAGTTGAGAATGAACTGTGCATTACAAAGAGTTTTTCATGGGCAATTCAAATTGTTGAGGCGACCTACCACTACGCGACCTACTACGACCAGGCGACCTACCGATGGCTATTCCCAGAAAGTATTATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATAGAATACCTGGACAAAGAAAACATAACCGTTGATCCACCTCCCGTTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCGTAATATTTCGTCTAGACCATGAAGAAATTCCAATGGATTTTAGAAGAGATCACATGTGGTTACATTATGAAGAGGTTTCTATGGACGAACGTGGTATTCATCATTATCCTTTCAGGTTGAGGTCGATTATCTCATTGTTGGCTTACGAGGATTTTGTTACGGCGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGATGCATTGTGCAAATTTGACAGCTCGGAAGCGCAAGACGTAA 1101 0.3969 MPDVAEALNLERINLQGCVKLQKLNPSIGSLRKLVVLNLRHCKKLVILSNIILGLNSLKYLDVLLDETRNTEHLISCLSPSSPLSCLCELDLSFCSLVEIPDYIGKLRCLESLNLEGNNFVKLPNLKDLFRLSFLNLQDCKRLKYLPDLPSRTVLPLEHFKLSRVSAPILVWPYLLSCKSTGLIIFGCPELVENELCITKSFSWAIQIVEATYHYATYYDQATYRWLFPESIIPGSQIPSLFNNEFVNVDIEYLDKENITVDPPPVPHDNNFIGVLCCVIFRLDHEEIPMDFRRDHMWLHYEEVSMDERGIHHYPFRLRSIISLLAYEDFVTADVKKFQYRWVNEQDLINLKMMHCANLTARKRKT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium238g00001 366 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Vium238g00001 366 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 193 - -
Vium238g00001 366 Gene3D Ribonuclease Inhibitor 1 215 IPR032675 -
Vium238g00001 366 SUPERFAMILY L domain-like 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium238g00001 Vium-Chr238 50 1948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium238g00001 1 165 WRKY Transcription Factor Family AT4G12020 34.857 5.63e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium238g00001 - - vum:124847783 598.201