Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2389g00001 ATGGTTTTTACTTCCATTCCAGCTTCTTACTTTGATGCATCCAATTGGCAGCAACAGCAACCAAATAACCAACCCGGAGGCAGTGACTCCAACTCTCAGCAGCTGCTTCAACCACCACCGCCACCACTTCCGGTTGCAATGCAGTCTCATGGAGAGGGTTCAATCAGGCCAGGATCCATGGCGGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCATTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGTGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGTACCTGCGGCAGTGGCGGCGGCTCCAACTCTCCGGCAACCTCTGATCGCCAGACAGGAAGTGTCAATTCTACCAACTCGGGATCTTCGAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCATCCTTCAGATTCATGCCTCCATTGCATCAACTTGGTGACTTTGGAGATGGAGACATAAGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTAGGAGACTTGGGTTATCAAATTGGAACAAGTGCTTTAGGTGGTGGTGCCACTTCAATCTTCTCTGCACCTGGTTTGGACCAATGGAGAATGCCACAGCAGTTTCCCCTCTTGGCCTCCTTGGAAGGTTCTTCACCAGCTTCTAATTTATACCCTTTTGAAGGTAGTGCTGAGGTGAGTGGATATATAAGGCCAAAGGTTTCAACTTCTGGGATCATGGCTCAGATAGCTTCGGTGAAAATGGAAGAACGTAAGGAACCTGACTTGTCAACACTTTTCTTGGGAAACGATAATCCAGTGAATGAACATTATTGGACCAGTGCTAGTTCTGCATCTTGGACACATATTTCTGGGATTAGCTCCTCTTTCACTGCGAGCAACCATCTATAA 1008 0.5 MVFTSIPASYFDASNWQQQQPNNQPGGSDSNSQQLLQPPPPPLPVAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGTCGSGGGSNSPATSDRQTGSVNSTNSGSSKSERIGLAPQIPSFRFMPPLHQLGDFGDGDISLNYGLSYGPVGGVGDLGYQIGTSALGGGATSIFSAPGLDQWRMPQQFPLLASLEGSSPASNLYPFEGSAEVSGYIRPKVSTSGIMAQIASVKMEERKEPDLSTLFLGNDNPVNEHYWTSASSASWTHISGISSSFTASNHL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2389g00001 335 MobiDBLite consensus disorder prediction 120 166 - -
Vium2389g00001 335 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vium2389g00001 335 MobiDBLite consensus disorder prediction 13 59 - -
Vium2389g00001 335 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vium2389g00001 335 MobiDBLite consensus disorder prediction 13 34 - -
Vium2389g00001 335 MobiDBLite consensus disorder prediction 134 166 - -
Vium2389g00001 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 162 IPR045174 GO:0003700|GO:0006355
Vium2389g00001 335 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2389g00001 Vium-Chr2389 36786 38484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2389g00001 44 320 C2C2-Dof Transcription Factor Family AT3G55370 42.000 3.01e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2389g00001 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2389g00001 - - rcu:8279572 361.688