Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2388g00004 ATGGTGAGAACTTTTTTTGTGTTGAATCTGTTCTTGATATTTCAAAGTTTGATTGTGTTTTCAAATGGTGGCGTCCTAATTGACATATGCCCGACTCCAATTGCAGGTTATGCATTCATCTGCAAGTTTTCTGGTTTAGTAGTGCTGCAGTTGGAAGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACTGTAAACAGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACGTAGAGTTTCTTGAAGTGCAGGCTGTTCAAGAAGCTCTTTCGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAATATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGAAAAGTTCCGAGGTTTAGAATGGGAATGCGGTATAGTCCCTACTATTAA 525 0.4381 MVRTFFVLNLFLIFQSLIVFSNGGVLIDICPTPIAGYAFICKFSGLVVLQLEVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2388g00004 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 116 IPR000504 GO:0003723
Vium2388g00004 174 SUPERFAMILY RNA-binding domain, RBD 53 144 IPR035979 GO:0003676
Vium2388g00004 174 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 52 135 - -
Vium2388g00004 174 CDD RRM_II_PABPs 53 118 - -
Vium2388g00004 174 Gene3D - 3 126 IPR012677 -
Vium2388g00004 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Vium2388g00004 174 SMART rrm1_1 45 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2388g00004 Vium-Chr2388 37586 39791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2388g00004 40 173 Eukaryotic Initiation Factors Gene Family AT2G36660 25.735 1.82e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2388g00004 K14396 - rcu:8282991 221.09