Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2388g00003 ATGCTTATCGGAAACATAATTGCAGAGATAAAGGACCCACCAAAACGATCTAAAAACAATGACATCCCTGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACTGTAAACAGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACGTAGAGTTTCTTGAAGTGCAGGCTGTTCAAGAAGCTCTTTCGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAATATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGAAAAGTTCCGAGGTTTAGAATGGGAATGCGCTATAGTCCCTACTATTAA 438 0.4498 MLIGNIIAEIKDPPKRSKNNDIPVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2388g00003 145 SUPERFAMILY RNA-binding domain, RBD 25 115 IPR035979 GO:0003676
Vium2388g00003 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 106 - -
Vium2388g00003 145 Gene3D - 2 97 IPR012677 -
Vium2388g00003 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 87 IPR000504 GO:0003723
Vium2388g00003 145 CDD RRM_II_PABPs 24 89 - -
Vium2388g00003 145 SMART rrm1_1 24 89 IPR000504 GO:0003723
Vium2388g00003 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2388g00003 Vium-Chr2388 33811 36397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2388g00003 24 144 Eukaryotic Initiation Factors Gene Family AT2G36660 25.203 4.72e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2388g00003 K14396 - rcu:8282991 220.705