Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2388g00001 ATGGCTGAGTGGAAGAAATTGAGAGTTTTTGGAGAAGGTTCATATGGCACAGTGTATCTGGTTCTTCTACGTTCTATAGAAGAACAAAATCCGAAAATCTCACTCTTAGCATTGAAGACAAGTTCTTCCTATTCAATGTTAAGGGAGAAAAAGGTTTTTGAGTTATTACGGGGTTGCGAAGGAATCGTACAATGTTATTATTATAAATGCATTGTTGAGAGAGGTTATTTAACTTATAACCTCTTCATGGAGTATGCCCCTCATGGTTCTTTAGGCAATTTAATAAAGACAAAGTTATTATCCGACAAGGAAGTGATAGTCTACACTCACATGCTTCTCAAGGGACTTTCTTGCATGCATGAAAAAGGAATTGTTCATTGTGATCTTAAACCGGATAACATTCTCCTCTTTCCTTCATGGGATGATCGTACAAAATATCAACTAAAGATTTCTGATTTTGGATTGTCCAAGACTAGCGAAGAGGCAAATGCTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTATTACATGTCACCGGAATCACTTGCATTTTTCAATGAAGCACCAAAGATACCAGATGAACTTAGTTACGATTGCAAGGATTTTTTGAAAAAATGTTTGATCAATGATCCTCAACAAAGATGGACGGCTAAAATGCTTCTAGATCATCCTTTTATTCAAAAGGAATATCCAACATCATTGGCTAGGAGAGATAGAGCTTCCTTAGCTTTTGGAGTTGTTTTAGGACTCCTAGAGCTGTTGGATCTGTCAGGTTATTTTGGGACTGATTGGTATCTACTTTGCAAAAAATTGGCTTTGTATAGTAAGAACTTTAGTTGGACTTATGGGTTGTTATCATCTAGTGTGGCGTTGAGGGGTAGTTTTCTAGCATTGAGCGCCACATTCCAATGGCTCCCTGGTGTTGAGGGTCAGTTTCTTGGCACTGAGCACCCACACTCTAGTGGCTTTGGCGTTTAG 981 0.3874 MAEWKKLRVFGEGSYGTVYLVLLRSIEEQNPKISLLALKTSSSYSMLREKKVFELLRGCEGIVQCYYYKCIVERGYLTYNLFMEYAPHGSLGNLIKTKLLSDKEVIVYTHMLLKGLSCMHEKGIVHCDLKPDNILLFPSWDDRTKYQLKISDFGLSKTSEEANADLGEIKFRGTPYYMSPESLAFFNEAPKIPDELSYDCKDFLKKCLINDPQQRWTAKMLLDHPFIQKEYPTSLARRDRASLAFGVVLGLLELLDLSGYFGTDWYLLCKKLALYSKNFSWTYGLLSSSVALRGSFLALSATFQWLPGVEGQFLGTEHPHSSGFGV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2388g00001 326 ProSiteProfiles Protein kinase domain profile. 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2388g00001 326 Pfam Protein kinase domain 5 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2388g00001 326 Gene3D Transferase(Phosphotransferase) domain 1 186 241 - -
Vium2388g00001 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium2388g00001 326 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 187 237 - -
Vium2388g00001 326 SUPERFAMILY Protein kinase-like (PK-like) 3 235 IPR011009 -
Vium2388g00001 326 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Vium2388g00001 326 SMART serkin_6 4 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2388g00001 Vium-Chr2388 1864 5485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2388g00001 3 227 MAP Kinase Kinase Kinase AT4G36950 34.657 3.95e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium2388g00001 Pkinase 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2388g00001 - - vum:124830341 656.366