Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2383g00007 ATGAAAGGAGGCAAGTCAAAAACTGAATCTAAGAGAGGCGATGCCAAACTTGCTGTGAATAAGAAGGGTGCGCCAGCCAAGGCCAGGAAACCAGCAGGCAAGGGCAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTTAGGAAACAATTTAACAAGGAACATCCTGACAACAAAGCCGTGTCTGCTGTGGGAAAGGCTGCTGGAGCAAAATGGAAGTCAATGTCTGACGCTGAAAAAGCACCATATGTGGCAAAGTCTGAGAAAAGAAAGGTCGAGTATGAGAAAAGCATGAGAGCCTACAACAAGAAACAGGCTGAAGGTCCTACTGGTGGAGATGAAGAAGAGTCCGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGACGAGGAGGGCAGTGCCGAGGAGGAGGATGACGATTAG 459 0.4815 MKGGKSKTESKRGDAKLAVNKKGAPAKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSAEEEDDD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2383g00007 152 MobiDBLite consensus disorder prediction 93 129 - -
Vium2383g00007 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Vium2383g00007 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Vium2383g00007 152 MobiDBLite consensus disorder prediction 130 152 - -
Vium2383g00007 152 CDD HMG-box_AtHMGB1-like 45 105 - -
Vium2383g00007 152 Coils Coil 95 115 - -
Vium2383g00007 152 SMART hmgende2 43 114 IPR009071 -
Vium2383g00007 152 Gene3D High mobility group box domain 19 122 IPR036910 -
Vium2383g00007 152 SUPERFAMILY HMG-box 32 118 IPR036910 -
Vium2383g00007 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Vium2383g00007 152 MobiDBLite consensus disorder prediction 1 18 - -
Vium2383g00007 152 MobiDBLite consensus disorder prediction 1 50 - -
Vium2383g00007 152 MobiDBLite consensus disorder prediction 78 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2383g00007 Vium-Chr2383 79740 81770 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium2383g00007 HMG_box 3.1e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2383g00007 K25507 - gmx:100500173 208.764