Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2383g00003 ATGAGTTGTTTTTCGTGCTTTGTTTCTCGCCGGAAAGATGTCAGGAGGGTTGAAATTGACAATGGCACTCGATCTGCTACTGCTGCTTCCTCAGAGGGTGAAAGGAAGAGAGAATCCTCAGAGGCAAAGGGGAAGAGTGTGAGTAGTGGTAAAGGAAGTACCGCAGCGGCTAGTTTTGGTTTCCGCGAACTCGCTGCGGCGACGAGGGGTTTCAAGGAAGTGAACTTAATTGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGTCGACTTTCAACGGGCGAGCTTGTTGCCGTGAAACAATTGAGCCATGATGGTCGACAAGGTTTTCAGGAATTCGTGACGGAGGTTCTTATGTTGAGCTTGCTGCACCATTCTAATCTTGTGAAGTTAATTGGCTACTGCACGGATGGAGATCAGAGACTTTTGGTTTATGAGTACATGCCCATGGGTTCACTGGAAGATCATCTTTTTGATCCGACCCAAGACAAAGAACCCCTAAGTTGGAGTTCTCGAATGAAGATTGCTGTTGGAGCTGCTCGTGGCCTCGAGTATCTCCATTGTAAAGCAGATCCACCTGTTATTTACAGAGACTTGAAATCTGCTAACATCTTGTTAGATAATGAATTCAACCCAAAACTATCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCACCTGAGTATGCCATGAGCGGCAAACTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGAGCAATAGATACCAGTAGAAAGCCAGGAGAGCAAAACTTGGTTTCGTGGTCTCGTCCATATTTTAGTGACAGGAGAAAGTTTGTGCATATGGTTGACCCTCTTTTACAAGGCAACTTCCCCTTACGCTGTTTGCATCAGGCAATTGCTATAACTGCCATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTATTACTGAAGTGCATAGACATGGTGGGCGCAGCTCACCGCAACAACCATCTTCGGAAATGGACAGAAATTAA 1125 0.4533 MSCFSCFVSRRKDVRRVEIDNGTRSATAASSEGERKRESSEAKGKSVSSGKGSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDPTQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDTSRKPGEQNLVSWSRPYFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSITEVHRHGGRSSPQQPSSEMDRN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2383g00003 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vium2383g00003 374 MobiDBLite consensus disorder prediction 30 44 - -
Vium2383g00003 374 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vium2383g00003 374 Gene3D Transferase(Phosphotransferase) domain 1 147 362 - -
Vium2383g00003 374 Pfam Protein kinase domain 71 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2383g00003 374 MobiDBLite consensus disorder prediction 355 374 - -
Vium2383g00003 374 PANTHER OS07G0668900 PROTEIN 3 354 - -
Vium2383g00003 374 MobiDBLite consensus disorder prediction 19 53 - -
Vium2383g00003 374 Gene3D Phosphorylase Kinase; domain 1 28 146 - -
Vium2383g00003 374 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2383g00003 374 FunFam Serine/threonine-protein kinase PBS1 147 361 - -
Vium2383g00003 374 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Vium2383g00003 374 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2383g00003 374 CDD STKc_IRAK 77 345 - -
Vium2383g00003 374 FunFam probable serine/threonine-protein kinase RLCKVII 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2383g00003 Vium-Chr2383 30133 34675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2383g00003 1 370 Glycoside Hydrolase AT3G07070 58.639 5.85e-154 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium2383g00003 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2383g00003 - - gmx:100796595 605.134