Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2383g00001 ATGGGAAACTGTTTTGGAAAGACAGATGATGCTAACAACGAAATTCGAACGATCAATAAACTTCCCCCAGGGAGATCAGAGAAGAAGGAAACGGTGGAAGGAAGAAAGGAGGAGGATTTGAGGAAGCTTATAAATTACACGTTGGATGATTTGAAAAGTGCGACAAGAAACTTCAGACCGGACACGGTCCTAGGAGAAGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAGCAACACGTTCAAACCTTCGAGAGTTGGAGTTGGAATCCCCGTTGCGGTGAAGAAATCTAACCCCGATAGCCTTCAGGGTATGCAAGAATGGATGAGTGAAGTGCAATTTTTGGGGAGGCTCTCTCATCCAAACCTAGTTAAACTAATTGGCTACTGCTGGGAGGATAATCAATTCCTCCTGGTGTACGAATACATGCAAAAGGGAAGTCTTGAAAGCCACCTGTTCAGAAAAGGTCCAGAACCACTTTCATGGGATATAAGGCTGAAGATAGCCATAGGAGCTGCCAGAGGCCTAGCTTTCTTGCACACATCAGAGAAAACTGTCATATATAGAGACTTCAAGTCCTCAAACATTTTGCTAGATGGGGATTTCAATGCAAAGCTATCAGATTTTGGGCTGGCAAAACTTGGCCCCGTCAATGGTAAATCCCACGTAACCACGCGGATCATGGGCACCTATGGTTACGCTGCACCTGAATACATGGCCACAGGGCACCTGTATGTTAAAAGCGATGTGTACGGATTCGGCGTTGTTCTGCTAGAATTGCTAACGGGCAGAGCAGCTCTGGACACAACCCTACCCACAGATATGCAGAATTTGGTGCAGTGCAGTATGTCATCTCTGAATGACAGAAAGAGACTGCAAAAGATAATGGATCCAAAATTGGACTACCGATATTCACCAAGGGCAGCGTTTCACGTAGCCCAAGTTATCATCAAATGTTTAGAATCTGACCACAGAAAACGACCCTGCATGGTGGATGTTTTGGCAACCTTAGAAAAAGCACAAAGTATGAAGTACAAACCCAAAGGGAACAAAGCCTCCGCAATTCGTCAAACATCAGACGTGCATCACCCGAATTACCCACGTTCTTCACCATCACCGCTTCACTACAAAAACAACTATTAG 1146 0.4503 MGNCFGKTDDANNEIRTINKLPPGRSEKKETVEGRKEEDLRKLINYTLDDLKSATRNFRPDTVLGEGGFGRVFKGWIDSNTFKPSRVGVGIPVAVKKSNPDSLQGMQEWMSEVQFLGRLSHPNLVKLIGYCWEDNQFLLVYEYMQKGSLESHLFRKGPEPLSWDIRLKIAIGAARGLAFLHTSEKTVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGKSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLELLTGRAALDTTLPTDMQNLVQCSMSSLNDRKRLQKIMDPKLDYRYSPRAAFHVAQVIIKCLESDHRKRPCMVDVLATLEKAQSMKYKPKGNKASAIRQTSDVHHPNYPRSSPSPLHYKNNY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2383g00001 381 Gene3D Transferase(Phosphotransferase) domain 1 144 363 - -
Vium2383g00001 381 MobiDBLite consensus disorder prediction 346 381 - -
Vium2383g00001 381 SUPERFAMILY Protein kinase-like (PK-like) 42 338 IPR011009 -
Vium2383g00001 381 ProSiteProfiles Protein kinase domain profile. 58 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2383g00001 381 FunFam Serine/threonine-protein kinase PBS1 144 356 - -
Vium2383g00001 381 Gene3D Phosphorylase Kinase; domain 1 28 143 - -
Vium2383g00001 381 FunFam Serine/threonine-protein kinase BIK1 25 143 - -
Vium2383g00001 381 ProSitePatterns Protein kinases ATP-binding region signature. 64 97 IPR017441 GO:0005524
Vium2383g00001 381 Pfam Protein tyrosine and serine/threonine kinase 62 337 IPR001245 GO:0004672|GO:0006468
Vium2383g00001 381 PANTHER OS01G0588500 PROTEIN-RELATED 41 342 - -
Vium2383g00001 381 MobiDBLite consensus disorder prediction 353 381 - -
Vium2383g00001 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vium2383g00001 381 CDD STKc_IRAK 64 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2383g00001 Vium-Chr2383 13100 16239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2383g00001 16 338 Glycoside Hydrolase AT3G07070 47.546 5.28e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2383g00001 PK_Tyr_Ser-Thr 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2383g00001 - - gmx:100812725 563.148