Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00014 ATGGCTATCAGAGGCGTGGACTTCAAGTGGTACGATGGCTTTTTTTTGTCTATGCTCGCCACCAGTGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTGCCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGTTACTGTGGACTCCTCTGCATTGCTTGCATGTCTCTGGGAAAGTGGTTGACACGAAGACAAGCACATCTACTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTCGAAGCTGCTGGTCAAGAAACAAGGGGCATGGTGCAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGTCGTTGCTCAGTATTTCCAAACCTTGATCTTAGTGCACTATCCAATCTCCCAGCAGAGCCTGAGCGATCTTCAGCAAGCGTTGTGACAACAACCAGTTATGTGAGAGGCCAACCATCTACTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCTGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATTCTCTGGACAATGTTGAGAACGGTTTTGTATCAATTGTGACTCACAATACATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACTGTAAGACTTTCCTCTGCACAAAGTTAG 1149 0.4613 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCAYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLPAEPERSSASVVTTTSYVRGQPSTQSYRLRLQGLLRPVRAEIAGPVGDIDNSLDNVENGFVSIVTHNTSSGDHVSSVECVPVTVRLSSAQS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00014 382 SMART ring_2 235 275 IPR001841 -
Vium2382g00014 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Vium2382g00014 382 SUPERFAMILY RING/U-box 217 284 - -
Vium2382g00014 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Vium2382g00014 382 Pfam Ring finger domain 234 276 IPR001841 -
Vium2382g00014 382 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Vium2382g00014 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00014 Vium-Chr2382 115858 122337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00014 58 360 C3H Transcription Factor Family AT3G47990 72.876 3.23e-158 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00014 K16284 - gmx:100812016 738.799