Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00013 ATGGCTATCAGAGGCGTGGACTTCAAGTGGTACGATGGCTTTTTTTTGTCTATGCTCGCCACCAGTGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTGCCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGTTACTGTGGACTCCTCTGCATTGCTTGCATGTCTCTGGGAAAGGTGTGGTTGACACGAAGACAAGCACATCTACTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTCGAAGCTGCTGGTCAAGAAACAAGGGGCATGGTGCAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGTCGTTGCTCAGTATTTCCAAACCTTGATCTTAGTGCACTATCCAATCTCCCAGCAGAGCCTGAGCGATCTTCAGCAAGCGTTGTGACAACAACCAGTTATGTGAGAGGCCAACCATCTACTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCTGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATTCTCTGGACAATGTTGAGAACGGTTTTGTATCAATTGTGACTCACAATACATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACTGTAAGACTTTCCTCTGCACAAAGTTAG 1152 0.4618 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCAYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKVWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLPAEPERSSASVVTTTSYVRGQPSTQSYRLRLQGLLRPVRAEIAGPVGDIDNSLDNVENGFVSIVTHNTSSGDHVSSVECVPVTVRLSSAQS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00013 383 ProSiteProfiles Zinc finger RING-type profile. 236 277 IPR001841 -
Vium2382g00013 383 SUPERFAMILY RING/U-box 218 285 - -
Vium2382g00013 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 282 IPR013083 -
Vium2382g00013 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Vium2382g00013 383 FunFam E3 ubiquitin-protein ligase SIS3 204 282 - -
Vium2382g00013 383 SMART ring_2 236 276 IPR001841 -
Vium2382g00013 383 Pfam Ring finger domain 235 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00013 Vium-Chr2382 115858 122339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00013 58 361 C3H Transcription Factor Family AT3G47990 72.638 1.70e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00013 K16284 - gmx:100812016 734.176