Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00010 ATGAAGAACTTGTACTGGTTTAAAGAAATTTCTAACAACGTGAGATCAGGGAGAAGGCTTTCACTTGGGGAGTATAAGCGAGCGGTGTCATGGTCCAAGTATTTGATCTCTTCGGGGGCAGCCATAAAGGGAGAGGCTGAAGAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATTGGGTCCAAGTTTGCTTCTGGGAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGACGTTGCAATTAAGCTGGTGAGTCAACCGGAGGAGGATGAGGACTTAGCCGTTTCGCTAGAGCAGCAATTCACTTCTGAGGTTAATTTGCTCTTTCGATTGCGCCATCCAAATATCATCACCTTTGTTGCAGCTTGCAAGAAACCTCCTGTGTTCTGCATTATTACTGAATATTTGGGCGGGGGTTCGTTGAGAAAATACTTGATTCAGGAAGGACCACATTCGGTTCCTCACAACGTTGTTCTGAAATTAGCCTTAGACATTGCTCGGGGAATGCAATATCTTCATTCTCAGGGAATACTTCACAGGGATCTGAAATCAGAAAACCTGCTGTTGGGGGAAGATTTGTGCGCAAAAGTAGCAGATTTTGGGATCTCATGCTTGGAATCTCAGACTGGTAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAGAGAAAAGCGTCACACCAAAAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACCCCATTTGACAACATGACACCAGAGCAGGCAGCATATGCAGCCACTCACAAGAGCATGTGGCATGCCTACCATACACCCTTGCTTATCAAAGCAAGACACCTCATCGACAATATTATATTACCCAGAGATAGACACTTTTATATTATGCTTTACAACATTCAAGATTCGGTATCTGTTATCAAAATTTATCACAGACAATCATTGGTACCACCTCTGCCCTTTCACCCACATGCATCAAAATCAACTTACAGATTCGATCAACTGCTTATGTTTTGGACCAATGTAAGGTTTTCACGTTCACTGTTTTCTCACATGTCACACCACATCCTTTGGGTTCACATTGAACTACTTTTATGCATTGAACAAATGATTCTGCATTGA 1146 0.4302 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLISSGAAIKGEAEEEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVSLEQQFTSEVNLLFRLRHPNIITFVAACKKPPVFCIITEYLGGGSLRKYLIQEGPHSVPHNVVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLCAKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAATHKSMWHAYHTPLLIKARHLIDNIILPRDRHFYIMLYNIQDSVSVIKIYHRQSLVPPLPFHPHASKSTYRFDQLLMFWTNVRFSRSLFSHMSHHILWVHIELLLCIEQMILH 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00010 381 SMART serkin_6 57 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2382g00010 381 ProSiteProfiles Protein kinase domain profile. 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2382g00010 381 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vium2382g00010 381 CDD STKc_MAP3K-like 64 272 - -
Vium2382g00010 381 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vium2382g00010 381 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vium2382g00010 381 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vium2382g00010 381 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vium2382g00010 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vium2382g00010 381 SUPERFAMILY Protein kinase-like (PK-like) 47 282 IPR011009 -
Vium2382g00010 381 Gene3D Transferase(Phosphotransferase) domain 1 140 301 - -
Vium2382g00010 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 269 - -
Vium2382g00010 381 Pfam Protein tyrosine and serine/threonine kinase 59 269 IPR001245 GO:0004672|GO:0006468
Vium2382g00010 381 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00010 Vium-Chr2382 87870 90613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00010 30 273 MAP Kinase Kinase Kinase AT1G62400 64.113 7.34e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium2382g00010 PK_Tyr_Ser-Thr 3.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00010 - - vum:124830316 778.089