Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00009 ATGAAGAACTTGTACTGGTTTAAAGAAATTTCTAACAACGTGAGATCAGGGAGAAGGCTTTCACTTGGGGAGTATAAGCGAGCGGTGTCATGGTCCAAGTATTTGATCTCTTCGGGGGCAGCCATAAAGGGAGAGGCTGAAGAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATTGGGTCCAAGTTTGCTTCTGGGAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGACGTTGCAATTAAGCTGGTGAGTCAACCGGAGGAGGATGAGGACTTAGCCGTTTCGCTAGAGCAGCAATTCACTTCTGAGGTTAATTTGCTCTTTCGATTGCGCCATCCAAATATCATCACCTTTGTTGCAGCTTGCAAGAAACCTCCTGTGTTCTGCATTATTACTGAATATTTGGGCGGGGGTTCGTTGAGAAAATACTTGATTCAGGAAGGACCACATTCGGTTCCTCACAACGTTGTTCTGAAATTAGCCTTAGACATTGCTCGGGGAATGCAATATCTTCATTCTCAGGGAATACTTCACAGGGATCTGAAATCAGAAAACCTGCTGTTGGGGGAAGATTTGTGCGCAAAAGTAGCAGATTTTGGGATCTCATGCTTGGAATCTCAGACTGGTAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAGAGAAAAGCGTCACACCAAAAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACCCCATTTGACAACATGACACCAGAGCAGGCAGCATATGCAGCCACTCACAAGAATGAAAGGCCTCCGTTACCATGTGAGTGTCCACGGGCATTTAGTCATCTGATAAACAGATGCTGGTCAAGCAATCCAGATAAAAGACCACATTTTGATGAGATAGTTGCGATTTTGGAGAGCTATAGTGAAGCACTTGAGGAGGATCCACAGTTTTTAACCACTTACAAACCACGTCCTAATAATCTTATTCTCAGATGCTTACCCAAATGTAATACTACTGCCAATCTATCTGCTTCTACCAAACCTTAA 1068 0.4401 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLISSGAAIKGEAEEEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVSLEQQFTSEVNLLFRLRHPNIITFVAACKKPPVFCIITEYLGGGSLRKYLIQEGPHSVPHNVVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLCAKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAATHKNERPPLPCECPRAFSHLINRCWSSNPDKRPHFDEIVAILESYSEALEEDPQFLTTYKPRPNNLILRCLPKCNTTANLSASTKP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00009 355 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vium2382g00009 355 Gene3D Transferase(Phosphotransferase) domain 1 140 334 - -
Vium2382g00009 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vium2382g00009 355 SUPERFAMILY Protein kinase-like (PK-like) 45 311 IPR011009 -
Vium2382g00009 355 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 CDD STKc_MAP3K-like 64 311 - -
Vium2382g00009 355 Pfam Protein tyrosine and serine/threonine kinase 59 310 IPR001245 GO:0004672|GO:0006468
Vium2382g00009 355 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2382g00009 355 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 316 - -
Vium2382g00009 355 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Vium2382g00009 355 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00009 Vium-Chr2382 87349 90605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00009 30 320 MAP Kinase Kinase Kinase AT1G62400 63.729 2.08e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium2382g00009 PK_Tyr_Ser-Thr 2.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00009 - - gmx:100785212 668.692