Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00002 ATGGCCATCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCCTTCGGCGGTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTCCCGCGTAACGCCAACGGCACCGTGGCGGCTGAAGATTTAAAACGCTTTCTAGAAGCCTACTTCGGAGGTGCAGGGGACGATCTGGTGCACCTTACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCAGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGAATTTGCTTCCAACTTCTCTAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAATCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCAACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGTTGGGCGCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCACCAGATGGGTCACAAGCAATTATATCGTTTACAAGAAAACGGGCTTAATGCATGAAAAACTTGACGTTGAGCATTGTGGAGAATTTGGAGGTGGAGGCGAATACGTGCCCCAGACTGGTTTTGGGTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1656 0.4722 MAITPSTSLLSFLQRLQKTAFEAFGGTDFDPKTYVDVPLKFALSVTQDAFQKLPRNANGTVAAEDLKRFLEAYFGGAGDDLVHLTPHDFVREPEGFLPKVKHPQVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYTNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQEFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSNLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIATRWVTSNYIVYKKTGLMHEKLDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00002 551 ProSitePatterns Trehalase signature 2. 452 461 IPR018232 GO:0004555|GO:0005991
Vium2382g00002 551 Pfam Trehalase 29 542 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 SUPERFAMILY Six-hairpin glycosidases 29 544 IPR008928 GO:0005975
Vium2382g00002 551 Gene3D - 21 549 IPR012341 GO:0005975
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 188 206 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 368 384 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 445 461 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 525 538 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 293 310 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 258 275 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Vium2382g00002 551 PANTHER TREHALASE 9 549 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00002 Vium-Chr2382 10519 14918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00002 3 551 Trehalose Biosynthesis Gene Families AT4G24040 59.313 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00002 K01194 - gmx:547539 1004.2