Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2382g00001 ATGGCCATCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCCTTCGGCGGTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTTAAGTTCGCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTCCCGCGTAACGCCAACGGCACCGTGGCGGCTGAAGATTTAAAACGCTTTCTAGAAGCCTACTTCGGAGGTGCAGGGGACGATCTGGTGCACCTTACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCAGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTCCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTTTATTACTGGGATTCTTACTGGGTTATTAGGGGCCTGATCGCGAGTAAAATGCACGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGAATTTGCTTCCAACTTCTCTAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAATCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTGGTGTCGTTGAAAGTCTCAAAACTTCCGACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGCTGGGCGCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGGTCACAACGAATTATATCGTTTACAAGAAAACGGGCTTAATGCATGAAAAGCTTGACGTGGAGCATTGTGGAGACTTTGGAGGTGGAGGCGAATACGTGCCCCAGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1656 0.4752 MAITPSTSLLSFLQRLQKTAFEAFGGTDFDPKTYVDVPLKFALSVTQDAFQKLPRNANGTVAAEDLKRFLEAYFGGAGDDLVHLTPHDFVREPEGFLPKVKHPQVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYTNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQEFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVAGVVESLKTSDLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIAIRWVTTNYIVYKKTGLMHEKLDVEHCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2382g00001 551 ProSitePatterns Trehalase signature 2. 452 461 IPR018232 GO:0004555|GO:0005991
Vium2382g00001 551 Pfam Trehalase 29 542 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 SUPERFAMILY Six-hairpin glycosidases 29 544 IPR008928 GO:0005975
Vium2382g00001 551 Gene3D - 21 549 IPR012341 GO:0005975
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 188 206 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 368 384 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 445 461 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 525 538 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 293 310 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 258 275 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Vium2382g00001 551 PANTHER TREHALASE 9 549 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2382g00001 Vium-Chr2382 10394 19559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2382g00001 3 551 Trehalose Biosynthesis Gene Families AT4G24040 58.951 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2382g00001 K01194 - gmx:547539 1004.59