Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2378g00004 ATGGCGGATCAGTTCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCACACTGGTACAAGTAGTAACCAAGGTTTAAATTCAGGAAATGATGTGGGATCAGGGCCTCCTCGTAACCGTCTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACATCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGCGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTTCTTCTGCTCAACCAGGCAATGAAACTGAAGGAATTCGTGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATCAGTCAAATTTTTCGTCAGCTAACCCTGGAGATCAGAGAGTGGAATTGCCTTCTAATACGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGATTACTTGGTGGTCAAACTGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTATAAGAGGTCAAATACAGTCAGAGTCAGAGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGCTGACACTGCGTATGGGACAATCTTCTGTAGAATCAGTTGTTAACGCTGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGCCCACTTCCCTCCTCAACTCCTGGAAATTTGGGTTCCATTGGTATTGGAGGTGCTCCTAGGAACGTGAGCATTCATATACATGCTGGTACCTCTGTTCCCATTGTTTCAGCAATTGGTTCTAGACCAAATAATGGGGAAGGGGCCCGAAGTGAACAGCTTAATGAGCCTGGTTCTGATGGTTCAAGTTCAACACGGCAATTACCTGTTAGAAATGTTATAGCCACAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGGTTCAGTGTTTCTTCTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACGCAGCTCCATCAGGTGAAATTGAATCAATCAGCAGGGACTCATCTTCCGGATCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCATGGAACCGAATTTCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTTCGTCTGAAAGTGAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTAGTTGACGAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACTATTGTTAAACCAGAAAAAGATGGAGGCGTTTCAGCTGTCAGTGACGGACAAGATGTAACTGAACCTGCCAAGTCTGCTCCTCTAGGATTGGGTATGGGTGGCTTAGAGCGTAAGAAGCGAAACAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCTAGTTCTTCTGTCGATAAAAAGCAGACCAGAACAGATGGTCAACATATACTACAAACTCTCGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGACCCTTGCCATCCAGTGATCGTCCCATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAATATGTTGCAGCAGTTCACTCAGAGCCCACAGCTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCGAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTATTGAAGAAGCAGAACCTGGTGCACCCCACCAAGATGGAACGGTTAACAGAGATGAATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCCTTTCTAATGATCTTCTGGAAGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGGTCTGAAGCGGACAAATCCTAA 2811 0.444 MADQFSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEHTGTSSNQGLNSGNDVGSGPPRNRLGQISHSVVLGTFNVGEQGEGIVHDITRVIGHVLNSIGNGGQSTVNGPNAVQTSSAQPGNETEGIRAGNQNPAGNQAPSGQTFHGPTFQSVSHVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYQSNFSSANPGDQRVELPSNTQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRIRGQIQSESEQIGLAMQHLGALLLELGRTMLTLRMGQSSVESVVNAGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLPSSTPGNLGSIGIGGAPRNVSIHIHAGTSVPIVSAIGSRPNNGEGARSEQLNEPGSDGSSSTRQLPVRNVIATTIPSHPPGVGVSSSTQTGFSVSSSQPPDSASLSSALAEINARLMNVVGSMQGDNAAPSGEIESISRDSSSGSESRPSTLNAQQDTMEPNFFGASSASLVGSSSESELQTEAVQTSSNAERDVLVDEFVSSSKQDLQSCSSGETIVKPEKDGGVSAVSDGQDVTEPAKSAPLGLGMGGLERKKRNRPQPPVSKVADDGSSSSSVDKKQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSRALGGANPSSLFSIEEAEPGAPHQDGTVNRDEYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSLSNDLLEELCHNESLAREYVDMLRYDVSKLLEGRSEADKS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2378g00004 936 MobiDBLite consensus disorder prediction 489 516 - -
Vium2378g00004 936 Gene3D - 13 108 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 443 516 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 612 626 - -
Vium2378g00004 936 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Vium2378g00004 936 SMART ubq_7 24 95 IPR000626 GO:0005515
Vium2378g00004 936 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 935 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 533 693 - -
Vium2378g00004 936 FunFam Large proline-rich protein BAG6 16 109 - -
Vium2378g00004 936 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vium2378g00004 936 MobiDBLite consensus disorder prediction 93 135 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 676 693 - -
Vium2378g00004 936 CDD Ubl_ubiquitin_like 26 93 - -
Vium2378g00004 936 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vium2378g00004 936 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vium2378g00004 936 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vium2378g00004 936 MobiDBLite consensus disorder prediction 451 481 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 93 127 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 705 722 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 539 603 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 705 729 - -
Vium2378g00004 936 MobiDBLite consensus disorder prediction 173 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2378g00004 Vium-Chr2378 20254 35352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2378g00004 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.51e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2378g00004 - - gmx:100811870 1414.05