Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2378g00002 ATGGCGGATCAGTTCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCACACTGGTACAAGTAGTAACCAAGGTTTAAATTCAGGAAATGATGTGGGATCAGGGCCTCCTCGTAACCGTCTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACATCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGCGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTTCTTCTGCTCAACCAGGCAATGAAACTGAAGGAATTCGTGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATCAGTCAAATTTTTCGTCAGCTAACCCTGGAGATCAGAGAGTGGAATTGCCTTCTAATACGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGATTACTTGGTGGTCAAACTGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTATAAGAGGTCAAATACAGTCAGAGTCAGAGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGCTGACACTGCGTATGGGACAATCTTCTGTAGAATCAGTTGTTAACGCTGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGCCCACTTCCCTCCTCAACTCCTGGAAATTTGGGTTCCATTGGTATTGGAGGTGCTCCTAGGAACGTGAGCATTCATATACATGCTGCAATTGGTTCTAGACCAAATAATGGGGAAGGGGCCCGAAGTGAACAGCTTAATGAGCCTGGTTCTGATGGTTCAAGTTCAACACGGCAATTACCTGTTAGAAATGTTATAGCCACAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGGTTCAGTGTTTCTTCTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACGCAGCTCCATCAGGTGAAATTGAATCAATCAGCAGGGACTCATCTTCCGGATCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCATGGAACCGAATTTCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTTCGTCTGAAAGTGAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTAGTTGACGAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACTATTGTTAAACCAGAAAAAGATGGAGGCGTTTCAGCTGTCAGTGACGGACAAGATGTAACTGAACCTGCCAAGTCTGCTCCTCTAGGATTGGGTATGGGTGGCTTAGAGCGTAAGAAGCGAAACAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCTAGTTCTTCTGTCGATAAAAAGCAGACCAGAACAGATGGTCAACATATACTACAAACTCTCGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGACCCTTGCCATCCAGTGATCGTCCCATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAATATGTTGCAGCAGTTCACTCAGAGCCCACAGCTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCGAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTATTGAAGAAGCAGAACCTGGTGCACCCCACCAAGATGGAACGGTTAACAGAGATGAATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCCTTTCTAATGATCTTCTGGAAGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGGTCTGAAGCGGACAAATCCTAA 2787 0.4438 MADQFSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEHTGTSSNQGLNSGNDVGSGPPRNRLGQISHSVVLGTFNVGEQGEGIVHDITRVIGHVLNSIGNGGQSTVNGPNAVQTSSAQPGNETEGIRAGNQNPAGNQAPSGQTFHGPTFQSVSHVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYQSNFSSANPGDQRVELPSNTQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRIRGQIQSESEQIGLAMQHLGALLLELGRTMLTLRMGQSSVESVVNAGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLPSSTPGNLGSIGIGGAPRNVSIHIHAAIGSRPNNGEGARSEQLNEPGSDGSSSTRQLPVRNVIATTIPSHPPGVGVSSSTQTGFSVSSSQPPDSASLSSALAEINARLMNVVGSMQGDNAAPSGEIESISRDSSSGSESRPSTLNAQQDTMEPNFFGASSASLVGSSSESELQTEAVQTSSNAERDVLVDEFVSSSKQDLQSCSSGETIVKPEKDGGVSAVSDGQDVTEPAKSAPLGLGMGGLERKKRNRPQPPVSKVADDGSSSSSVDKKQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSRALGGANPSSLFSIEEAEPGAPHQDGTVNRDEYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSLSNDLLEELCHNESLAREYVDMLRYDVSKLLEGRSEADKS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2378g00002 928 MobiDBLite consensus disorder prediction 481 508 - -
Vium2378g00002 928 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vium2378g00002 928 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 609 685 - -
Vium2378g00002 928 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Vium2378g00002 928 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vium2378g00002 928 SMART ubq_7 24 95 IPR000626 GO:0005515
Vium2378g00002 928 MobiDBLite consensus disorder prediction 570 593 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 439 508 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 668 685 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 93 135 - -
Vium2378g00002 928 CDD Ubl_ubiquitin_like 26 93 - -
Vium2378g00002 928 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vium2378g00002 928 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 927 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 531 556 - -
Vium2378g00002 928 FunFam Large proline-rich protein BAG6 16 109 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 93 127 - -
Vium2378g00002 928 Gene3D - 13 108 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 697 714 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 525 556 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 445 473 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 697 721 - -
Vium2378g00002 928 MobiDBLite consensus disorder prediction 173 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2378g00002 Vium-Chr2378 20044 35352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2378g00002 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.62e-10 58.2