Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2378g00001 ATGACGGAGGAGCAGCAAATAGACCAAAGGAGTGGCTTCTGCCCTTCCAACTCAGTCTTCTACAGCAAGAGAAAACCACTCCCACTCCCTCCCAACAACGCCGTCGACGTCACCACCTTCATCTCTTCCCGAGCCCACCGTGGAACCACCGCCTTCATCGACGCCGCCACAGGCCACCACCTCAGCTACACCCAACTATGGCGATCGGTGGAGGGAGTGGCCGGCTCCCTCTGGGACATGGGGATCCGAAAGGGCAACGTGGTCCTTCTCCTCTCTCCCAACTCCATCGACTTCCCGGTGGTGTGCCTCGCCATCATGTCCCTGGGCGCCGTCATCACCACCACCAACCCCCTCAACACCACGCGGGAAATCGCCAAGCAGATCGCCGATTCCAAGCCCCTCCTCGCCTTCACCACCTCTCTCTTGCTCGCCAAACTCACCCAGGCAGCACCCTCTCTACCCATCGTTCTCATGGACTCCACCACTCATCCACCCATTCCCAACGCCAAAATTGTAGCCACGCTCCACGACATGGCCCAGAAGGAACCCAGAGCTCAACGCGTGAGAGAGCGCGTGGAGCAGGAAGACACGGCCACGCTGCTCTACTCCTCCGGCACCACAGGACCCAGCAAGGGCGTGCTTTCCTCCCACCGGAACCTCATAGCCATGGTCCAAATCGTCCTCGGACGCTTCCACGTTGATGACAACGAAACCTACATCTGCACGGTCCCCATGTTTCACATATACGGTCTCGTCGCCTTCGCCACCGGCCTCCTAGCCTCCGGCTCCACCATCGTCGTCCTCTCCAAGTTCGAGATGCACGACATGCTCTCTGCCATCCAGAGGTTCCGCGCCACCTACCTCCCCCTGGTTCCACCCATTCTGGTTGCCATGCTCAACAACGCCGACGCCATCAAGAAAAAGTACGATATCAAGTCCCTGCATTCGGTTCTATCCGGCGGGGCTCCCTTGAGTAAGGAGGTCATAGAGGGGTTTGTCGACAAGTACCCCAACGTCACCATACTTCAGGGTTATGGTTTGACGGAATCCACCGGTGTTGGGGCCTCCACCGACTCCTTGGAGGAGAGTCGCAGATACGGCACCGCGGGCCTCTTGTCGCCGGGCACCCAAGCCATGATTGTCGACCCTGACTCCGGCCAGTCGCTTCCGGTTAACCGCACCGGTGAGCTCTGGCTGAGGGGCCCCACCATCATGAAAGGATATTTCAGCAACGAAGAGGCGACGACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATGTTTGCTACATTGACAGTGATGGATTTATATTTATTGTGGATCGATTAAAGGAGCTTATAAAATACAAGGGATATCAGGTACCTCCAGCAGAACTTGAGGCCTTGTTACTGACTCATGATGCTATTTTAGATGCTGCTGTTATCCCGTATCCAGATAAGGAGGCTGGGCAGTTTCCGATGGCATACGTGGTGAGGAAGGATGGAAGTAGCCTGTCGGAAAGCCAAGTCATGGATTTTGTTGCAGAACAGGTGGCTCCCTACAAGCGGATTCGAAAAGTTGCGTTTATCTCTTCCATACCTAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTTGCAACTTCTAAACTATGA 1650 0.5527 MTEEQQIDQRSGFCPSNSVFYSKRKPLPLPPNNAVDVTTFISSRAHRGTTAFIDAATGHHLSYTQLWRSVEGVAGSLWDMGIRKGNVVLLLSPNSIDFPVVCLAIMSLGAVITTTNPLNTTREIAKQIADSKPLLAFTTSLLLAKLTQAAPSLPIVLMDSTTHPPIPNAKIVATLHDMAQKEPRAQRVRERVEQEDTATLLYSSGTTGPSKGVLSSHRNLIAMVQIVLGRFHVDDNETYICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSAIQRFRATYLPLVPPILVAMLNNADAIKKKYDIKSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPGTQAMIVDPDSGQSLPVNRTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDSDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHDAILDAAVIPYPDKEAGQFPMAYVVRKDGSSLSESQVMDFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2378g00001 549 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Vium2378g00001 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 543 - -
Vium2378g00001 549 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Vium2378g00001 549 Gene3D - 447 548 IPR045851 -
Vium2378g00001 549 Gene3D - 18 446 IPR042099 -
Vium2378g00001 549 CDD 4CL 29 541 - -
Vium2378g00001 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 446 - -
Vium2378g00001 549 Pfam AMP-binding enzyme 44 451 IPR000873 -
Vium2378g00001 549 SUPERFAMILY Acetyl-CoA synthetase-like 43 546 - -
Vium2378g00001 549 FunFam 4-coumarate--CoA ligase 2 447 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2378g00001 Vium-Chr2378 2139 6115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2378g00001 7 549 Monolignol Biosynthesis Gene Families AT1G20500 64.781 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2378g00001 K10526 - gmx:100811344 934.48