Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2377g00004 ATGGAATGTAAAAAGGATGGTGCCGTAAGGGCAAAAGAACTTGCAGAGAAGATGCTTTTACAGAAGGACTTTGGTGGGGCAAGAATGCTTGCAATGAAGGCTCTAGAATTATATCCCAATCTTGATGGCCTTCCTCGATTTCTGGCAACTATTGAGGTGTATATCGCAGCCGATAAAATGGTTAATGGAGAAGTTGACTGGTACAGGATCCTTGGTGTGCAACCCTTGGCTGATGAAGAAACAATTCGAAGACGATATAGGAAACTGGCTCTTACTCTGCACCCTGATAAAAATAAATCTGTAGGTGCTGATGGGGCGTTTAACCTTATCTCACAGGCTTGGAGTTTATTATCTGATAAGGACAAGAGGACCACATATGACCAAAAGTACAATTTATGGCGAACATATCATGGTAATCCTGGTGGGAAACCATCTGCGCCAGTTACTCAGAATGGTTTATATAGTAGTTTATTCCGGCCTGTGTTGTTGAAACCCACATTTTGGACCATTTGCAACTTCTGTAAGACAAAGTTTGAGTACCATAATGTTTATATTAACTCTGATCTTATCTGTACATGTTGCCATAAGCCATTTGTGGCTTCTGAGACATCACCTCCACCTGGATACAGAAATGGTTCGTCCTCTTCAATAATTTCTCAGATGAAGCAACATAACTTCAACTTAAGCAGAATGGAAAGAAGTAATGGAAATCATGTTCCCGGAAGGACACCAATGTCTGCTGTCAATTCAGCACATGGGTCAGGTCCTTTCTCTATGCCTAGTGGCACTTTCCGGATACCAACATCAGCTTCTAGTGCTGCAGAAACTCTTGGTGCATTTAGGATGTCTTCTGAAAATTTGAAGAGAATGCATGAAGATTCAACAGTGTCTTTAGAGGATGCCCATATTGGGAAAATTCATTCTGCTGAGAGAACTGGTGCTGGTTCAGTTTTTCAGTCCTCTGGTTTTGGTTCATATTCTATTATGAAAGGTGACAAGCCAAGGAAGAGAAGGTCCACTGATGAACATAAAGTAGGTAGAGATGGAAGAGATATGGAAAGCAAAACAGTATCTCAAACTGAAGGAACAAACTTGGCTAATGAATTTGGGTCAGGAAGGGTTAATGCTGCTGGAATTTACAAACGCAATGGTGTTAGGGAGGTATCACAGCTTCAAATGAAGCACCTATTGATGGAAAAGGCTCGGAAGGAGATTCTTAAAAATCTTGGTGAATTGAAAGCTTCTTCTGCATCAAAGAGTCTAAACAAGTCAAAGAATACTGACTCAGAAATCAATGAGAGGGGGAAAAGTTGTGAAATGAATGGTTTAAAGCCTGGTGCGCTAGAATTTGTTGATTCTAAGGCTGCCGGCAAGAAGTGTTTTTCTGTTCATCCAGATCCTGAGCTTCCTGGTTCTCTCTCTATGAATGTTCCAGACCCAGATTTCCATGATTTTGATGGAGACCGTATTGAAAGTGCTTTTGGTGAGAACCAGGTCTGGGCTGCATATGACAATGATGATGGCATGCCCCGGTTCTATTGTTTAATCCATGATGTAATCTCAAAGAATCCTCTGAATATGAGGATAAGCTGGTTGAATACCAAAAGCAATGATGAATTGGCCCCAATAAAGTGGATCAGTTCTGGCTTTCTTAAGACCAGTGGAGAGTTCAGAATAGGAAAGCGTGTGTATTATAGCACTCTTAACTCCTTTTCGCACAGAGTGAAATGGACAAAGGGTTCGAGAGGGGTTGTCCATATATATCCGAAGAAAGGTGATGTATGGGCACTGTATCGGAACTGGTCCCTTGACTGGAATGAATTCACTAAAGATGAAATCATACAGAAATATGACATGGTGGAGGTGCTTGAAGACTACAGTGAAGAGCAAGGGGTGAATGTTGCCCCACTTGTCAAGCTTGCAGGTTTCAAGACGGTATTTCGGCAGAATATTGATCCAAGAAAGGTCAGGAATATTTCAAAGGCGCAGATGTTTCGTTTCTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAGGGTCCCAACGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACGCCGATGGAGCTTCTTCAGGTGTTAGCTCAAGATCTGGAGCAAGAAATAATAATGACAACTGAAAAATCTGTGGAAGATGAATTGAAGCACAAATAG 2184 0.418 MECKKDGAVRAKELAEKMLLQKDFGGARMLAMKALELYPNLDGLPRFLATIEVYIAADKMVNGEVDWYRILGVQPLADEETIRRRYRKLALTLHPDKNKSVGADGAFNLISQAWSLLSDKDKRTTYDQKYNLWRTYHGNPGGKPSAPVTQNGLYSSLFRPVLLKPTFWTICNFCKTKFEYHNVYINSDLICTCCHKPFVASETSPPPGYRNGSSSSIISQMKQHNFNLSRMERSNGNHVPGRTPMSAVNSAHGSGPFSMPSGTFRIPTSASSAAETLGAFRMSSENLKRMHEDSTVSLEDAHIGKIHSAERTGAGSVFQSSGFGSYSIMKGDKPRKRRSTDEHKVGRDGRDMESKTVSQTEGTNLANEFGSGRVNAAGIYKRNGVREVSQLQMKHLLMEKARKEILKNLGELKASSASKSLNKSKNTDSEINERGKSCEMNGLKPGALEFVDSKAAGKKCFSVHPDPELPGSLSMNVPDPDFHDFDGDRIESAFGENQVWAAYDNDDGMPRFYCLIHDVISKNPLNMRISWLNTKSNDELAPIKWISSGFLKTSGEFRIGKRVYYSTLNSFSHRVKWTKGSRGVVHIYPKKGDVWALYRNWSLDWNEFTKDEIIQKYDMVEVLEDYSEEQGVNVAPLVKLAGFKTVFRQNIDPRKVRNISKAQMFRFSHQVPSYLLTGEEGPNAPKGCLELDPAATPMELLQVLAQDLEQEIIMTTEKSVEDELKHK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2377g00004 727 Pfam DnaJ domain 66 127 IPR001623 -
Vium2377g00004 727 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vium2377g00004 727 MobiDBLite consensus disorder prediction 325 360 - -
Vium2377g00004 727 MobiDBLite consensus disorder prediction 416 438 - -
Vium2377g00004 727 SMART dnaj_3 65 122 IPR001623 -
Vium2377g00004 727 MobiDBLite consensus disorder prediction 330 355 - -
Vium2377g00004 727 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vium2377g00004 727 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vium2377g00004 727 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vium2377g00004 727 PANTHER BNAC03G44070D PROTEIN 1 697 - -
Vium2377g00004 727 SUPERFAMILY Chaperone J-domain 63 145 IPR036869 -
Vium2377g00004 727 Gene3D DnaJ domain 64 166 IPR036869 -
Vium2377g00004 727 Coils Coil 698 718 - -
Vium2377g00004 727 Pfam Domain of unknown function (DUF3444) 474 680 IPR024593 -
Vium2377g00004 727 CDD DnaJ 66 119 IPR001623 -
Vium2377g00004 727 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2377g00004 Vium-Chr2377 30910 35115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2377g00004 8 207 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.816 2.91e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2377g00004 - - gmx:100797672 1177.54