Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2377g00003 ATGGAGAACAACCAGCAAGGGGGCCAAGGGCAATCGGGAGCCTACCCCGGCGCGGCAGCCGGAAGTGCAGGTGCAGGTGCAGGTGCGCCACCCTTCCAGCACCTCCTCCATCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCCTACCAGCGTCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAACTGCCCCTCGCTCGCATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGCATGATCTCGGCAGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATAACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTTCCTCGCGACGAGATCAAGGACGATGCCGCGCTCGTCGGGGCTACCGCTAGTGGTGTGCCTTACTATTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTCTACGTCCAGCCCCCGTCCCAGGCCTGGCAGTCTGTCTGGCAGTCCGCTGCCGACGACACATCGTACGGTGGCGCAGGCGGAGCCGGTGCGCAGGGGAGCATTGATGGCCAGAGCTGA 672 0.6265 MENNQQGGQGQSGAYPGAAAGSAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAADDTSYGGAGGAGAQGSIDGQS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2377g00003 223 MobiDBLite consensus disorder prediction 1 31 - -
Vium2377g00003 223 FunFam Nuclear transcription factor Y subunit gamma 33 142 - -
Vium2377g00003 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 38 157 - -
Vium2377g00003 223 Gene3D Histone, subunit A 31 142 IPR009072 GO:0046982
Vium2377g00003 223 Pfam Core histone H2A/H2B/H3/H4 53 127 IPR007125 GO:0003677
Vium2377g00003 223 SUPERFAMILY Histone-fold 39 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2377g00003 Vium-Chr2377 24647 29829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2377g00003 3 202 CCAAT-HAP5 Transcription Factor Family AT3G48590 77.512 8.41e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium2377g00003 CBFD_NFYB_HMF 2.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2377g00003 - - gmx:100783316 339.347