Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium236g00008 ATGGCTTCGAGATTCTGGACTCAGGGTGGGAGTGATTCCGAGGAGGAGGAGAGTGATTACGACGAGGAGGTTGAAACCGCGACAGGTGAATCTGCTAGTCAAGCAGTTACAAGCAGGTACCTGCAGGAAAATGCTAGTGACAGTGATGATTCCGATGGGCAGAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCCTCCACTGTTGATCAGATGAAAAATGCCATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAAGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCCTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCTAAAGCATTGAACACCATGAAGCAGAAACTGAAGAAAAATAATAAACAGTACGAGGATTTGATTAATAAGTGTAGGGAGAATCCTGAGAGTGACGAGGAGAAGGAAGAAGAGGAGAGCGAGGAAGAATATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAACCGGAAGCAAAATCTGATTCTGAAGCCTCTCAGTATGATGATGAAAAGCATGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATAGACAATTTATGAAAGACCCCAGTGAGATCACATGGGACTCGGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCTGGGCTCAATGGACATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGGTCATTCTTGATATTCTAGTGCAGCATACAAACATATTGGTTGACGATTCGGTGGAACCAGACGAGAACGAAACTCAGAAAGGGGCTGACTATAATGGACCAATTCGGGTATGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGGAATTTCAAAGCTGCCTCTAAGGTGGCCTTGAGGAGAGTTGAGCTCATTTACTACAAACCGCAAGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGAATGGAGATGATGCAGGGGAGACAAGTGAAGAGCCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTATTGTTACCCCAGAGATTGTGGCCCGGAAGCCCACATTCCCTGATAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGTACGGAGACGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTACTTCTTATGAGTCATTTGCAAGATAGTATTCAACACATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCTCATGGTTGTCTCTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTGTCACAAAGTCGCTATCATGAGAAGACTCCCGAACAGGAAAGGTTGGAAAGAAGGAGGCAAATGCCATATCATATGCACATCAATCTTGAACTCCTGGAGTCAGTACATCTGGTATCTGCCATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATTTCTAAGACTTTCCGTCGCTTGCTTGAGGCCAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCGTAAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTCGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCGCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTTCAAAATTTTTTGATCTCTCTGTTTCTTGCACCCATAGTATTGTCAGTAGAATGATGATCAATGAAGAGCTCCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGCAATGAAAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCGCAGCCGCGGCCGGTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGGCTCTTTCACAGCCAAGGCAAGGCAGTGGGCGTGCTGGATACGGTAGTGGTGGTGGGAGGTCAATAGGTCAAGTAGCCGCAGGTGGCTATTCCAGGGATCGAATGGGACGGGGCACAGGTGGTGGCTACCAGAGTGGACGGTATCATGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCATTGAGGGGACCCCAGGGCGATACGTCTTCACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2823 0.4566 MASRFWTQGGSDSEEEESDYDEEVETATGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEDLINKCRENPESDEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDEKHDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDSVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHTNILVDDSVEPDENETQKGADYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTENGDDAGETSEEPKGFEESRIPTAFIVTPEIVARKPTFPDNSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSIQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEASEKQTFTGPPENVRDHVMAATRFLVKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFASSYESLSLDQLSKFFDLSVSCTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASSGGRWQDLALSQPRQGSGRAGYGSGGGRSIGQVAAGGYSRDRMGRGTGGGYQSGRYHDGGYGRSAQGGSALRGPQGDTSSRMVSLKGVRA 940
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium236g00008 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium236g00008 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Vium236g00008 940 Pfam PCI domain 660 788 IPR000717 -
Vium236g00008 940 Coils Coil 144 171 - -
Vium236g00008 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Vium236g00008 940 MobiDBLite consensus disorder prediction 45 63 - -
Vium236g00008 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium236g00008 940 MobiDBLite consensus disorder prediction 883 940 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 27 44 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 1 63 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 194 229 - -
Vium236g00008 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vium236g00008 940 MobiDBLite consensus disorder prediction 175 193 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 135 154 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 155 174 - -
Vium236g00008 940 MobiDBLite consensus disorder prediction 12 26 - -
Vium236g00008 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Vium236g00008 940 MobiDBLite consensus disorder prediction 133 229 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium236g00008 Vium-Chr236 41566 45561 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium236g00008 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.538 0.0 1204
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium236g00008 K03252 - gmx:100781967 1567.75