Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00040 AATGCATATTTGCAAATCTTGNTCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATGCCACACACTGCCACACACCGCAACTAGAGCAGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACCGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCGGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAATGCCAAGCAAGCTTTTGAATCGGCTAACATCAATTCTGCCTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTCGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGATGCAAATATACTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAATTAAAGCACCACCCTGGTCAGATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTAGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCGTCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCACTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCAGAGAATGAGAAGGACGTTAACACATCGATCTTTCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCGATATGTTAA 1776 0.4426 NAYLQILXRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFESANINSAFFELQPKEGLALVNGTAVGSGLASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKTILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00040 591 CDD PAL-HAL 7 401 IPR001106 -
Vium2368g00040 591 NCBIfam phenylalanine ammonia-lyase 7 580 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vium2368g00040 591 Gene3D - 2 137 IPR024083 -
Vium2368g00040 591 FunFam Phenylalanine ammonia-lyase 138 448 - -
Vium2368g00040 591 SUPERFAMILY L-aspartase-like 7 591 IPR008948 GO:0003824
Vium2368g00040 591 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 73 89 IPR022313 GO:0016841
Vium2368g00040 591 Pfam Aromatic amino acid lyase 7 413 IPR001106 -
Vium2368g00040 591 Gene3D - 404 525 IPR023144 -
Vium2368g00040 591 PANTHER HISTIDINE AMMONIA-LYASE 7 591 IPR001106 -
Vium2368g00040 591 FunFam Phenylalanine ammonia-lyase 404 525 - -
Vium2368g00040 591 Gene3D Fumarase/aspartase (Central domain) 138 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00040 Vium-Chr2368 316813 318815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00040 7 591 Monolignol Biosynthesis Gene Families AT2G37040 84.444 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00040 K10775 - gmx:100811101 1110.13