LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2368g00039	ACAGGAATTCCTAATTCTGATTCTTTTATTATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATGCCACACACTGCCACACACCGCAACTAGAGCAGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACCGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCGGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAATGCCAAGCAAGCTTTTGAATCGGCTAACATCAATTCTGCCTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTCGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGATGCAAATATACTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAATTAAAGCACCACCCTGGTCAGATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTAGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCGTCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCACTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCAGAGAATGAGAAGGACGTTAACACATCGATCTTTCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCGATATGTTAA	1785	0.4415	TGIPNSDSFIIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFESANINSAFFELQPKEGLALVNGTAVGSGLASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKTILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC	594

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2368g00039	594	Gene3D	Fumarase/aspartase (Central domain)	141	589	-	-
	Vium2368g00039	594	CDD	PAL-HAL	10	404	IPR001106	-
	Vium2368g00039	594	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	76	92	IPR022313	GO:0016841
	Vium2368g00039	594	PANTHER	HISTIDINE AMMONIA-LYASE	10	594	IPR001106	-
	Vium2368g00039	594	NCBIfam	phenylalanine ammonia-lyase	10	583	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Vium2368g00039	594	FunFam	Phenylalanine ammonia-lyase	407	528	-	-
	Vium2368g00039	594	FunFam	Phenylalanine ammonia-lyase	141	451	-	-
	Vium2368g00039	594	Gene3D	-	407	528	IPR023144	-
	Vium2368g00039	594	Pfam	Aromatic amino acid lyase	10	416	IPR001106	-
	Vium2368g00039	594	Gene3D	-	5	140	IPR024083	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2368g00039	Vium-Chr2368	314800	316733	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2368g00039	10	594	Monolignol Biosynthesis Gene Families	AT2G37040	84.444	0.0	1064

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2368g00039	K10775		-	gmx:100811101	1111.29

Showing 1 to 1 of 1 entries