Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00039 ACAGGAATTCCTAATTCTGATTCTTTTATTATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATGCCACACACTGCCACACACCGCAACTAGAGCAGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACCGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCGGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAATGCCAAGCAAGCTTTTGAATCGGCTAACATCAATTCTGCCTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTCGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGATGCAAATATACTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAATTAAAGCACCACCCTGGTCAGATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTAGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCGTCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCACTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCAGAGAATGAGAAGGACGTTAACACATCGATCTTTCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCGATATGTTAA 1785 0.4415 TGIPNSDSFIIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFESANINSAFFELQPKEGLALVNGTAVGSGLASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKTILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00039 594 Gene3D Fumarase/aspartase (Central domain) 141 589 - -
Vium2368g00039 594 CDD PAL-HAL 10 404 IPR001106 -
Vium2368g00039 594 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 76 92 IPR022313 GO:0016841
Vium2368g00039 594 PANTHER HISTIDINE AMMONIA-LYASE 10 594 IPR001106 -
Vium2368g00039 594 NCBIfam phenylalanine ammonia-lyase 10 583 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vium2368g00039 594 FunFam Phenylalanine ammonia-lyase 407 528 - -
Vium2368g00039 594 FunFam Phenylalanine ammonia-lyase 141 451 - -
Vium2368g00039 594 Gene3D - 407 528 IPR023144 -
Vium2368g00039 594 Pfam Aromatic amino acid lyase 10 416 IPR001106 -
Vium2368g00039 594 Gene3D - 5 140 IPR024083 -
Vium2368g00039 594 SUPERFAMILY L-aspartase-like 10 594 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00039 Vium-Chr2368 314800 316733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00039 10 594 Monolignol Biosynthesis Gene Families AT2G37040 84.444 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00039 K10775 - gmx:100811101 1111.29