Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00037 ATGGAAGCAACTACCCTCACCAACGGCAACCAAAACGGTTCCTTCTGCTTGACTTCCACCAAGAGCAGTGATCCTCTCAATTGGGGAACGGCCGCCGAGGCGCTCAAGGGGAGCCACCTCGATGAGGTCAAGCGCATGGTGGCCGAATACCGTCAGCCGCTGGTCCGCCTCGGTGGCGAGACGCTCACCATCGCTCAGGTGGCGGCGGTGTCTGCACACGACCAAGGCGTGAGGGTGGAGCTGTCGGAGTCCGCTCGGGAAGGTGTTAAGGCGAGCAGTGACTGGGTGATGAACAGCATGAACAATGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCACTTCAGAAAGAACTCATCAGGTTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATGCCACACACTGCCACACACCGCAACTAGAGCAGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACCGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCGGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAATGCCAAGCAAGCTTTTGAATCGGCTAACATCAATTCTGCCTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTCGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGATGCAAATATACTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAATTAAAGCACCACCCTGGTCAGATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCAAATCTCACTGCTAGCAGAAATCCTAGCTTAGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAGTATCTCGCAAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCGTCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCACTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCAGAGAATGAGAAGGACGTTAACACATCGATCTTTCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCGATATGTTAA 2148 0.4735 MEATTLTNGNQNGSFCLTSTKSSDPLNWGTAAEALKGSHLDEVKRMVAEYRQPLVRLGGETLTIAQVAAVSAHDQGVRVELSESAREGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFESANINSAFFELQPKEGLALVNGTAVGSGLASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKTILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00037 715 FunFam Phenylalanine ammonia-lyase 262 572 - -
Vium2368g00037 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Vium2368g00037 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Vium2368g00037 715 Pfam Aromatic amino acid lyase 62 537 IPR001106 -
Vium2368g00037 715 Gene3D - 528 649 IPR023144 -
Vium2368g00037 715 Gene3D - 15 261 IPR024083 -
Vium2368g00037 715 FunFam Phenylalanine ammonia-lyase 15 261 - -
Vium2368g00037 715 CDD PAL-HAL 60 525 IPR001106 -
Vium2368g00037 715 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 -
Vium2368g00037 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Vium2368g00037 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Vium2368g00037 715 NCBIfam phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00037 Vium-Chr2368 299848 304616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00037 22 715 Monolignol Biosynthesis Gene Families AT2G37040 83.573 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00037 K10775 - gmx:100787902 1341.25