Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00031 ATGGCCATGGCCAAGGACATAGAAACCGAGGTACCAACTGAATTGACCCACAAGGACTATTACGACCCACCCCCAGCCCCATTCTACGACGCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGGGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGATGCACCTCGGCGACTCCTGTGATGGCGTCGGCATTCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCGGGCATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTTGCCAGGAAGGTGTCGCTGGTGAGAGCGATCGCGTACATGGTGGCTCAGTGCTTGGGAGCTATATCTGGCGTGGGGCTGGTAAAGGCATTTCAGAAGAGCTACTACAACAGGTACAATGGTGGCGTGAACTTGCTCTCTGATGGGTACAGTAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTTGCGGTGTTCGTGGTTCACTTGGCCACCATCCCTGTCACCGGCACTGGCATCAACCCCGCCAGAAGCTTCGGCCCTGCTGTCATACTCAACAACGAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTCGGACCTTTCATCGGTGCAGCCATTGCCGCAGTCTACCACCAGTACGTATTGAGGGCACAAGCGGCAAAGGCTCTCGGGTCATTCAGGAGCTCCTCGCACCTGTAA 861 0.5679 MAMAKDIETEVPTELTHKDYYDPPPAPFYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQMHLGDSCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQCLGAISGVGLVKAFQKSYYNRYNGGVNLLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGPAVILNNEKAWDDQWIFWVGPFIGAAIAAVYHQYVLRAQAAKALGSFRSSSHL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00031 286 NCBIfam MIP family channel protein 45 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 Pfam Major intrinsic protein 33 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 SUPERFAMILY Aquaporin-like 33 270 IPR023271 -
Vium2368g00031 286 Gene3D Glycerol uptake facilitator protein. 26 286 IPR023271 -
Vium2368g00031 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Vium2368g00031 286 CDD MIP 41 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 280 IPR034294 -
Vium2368g00031 286 FunFam Probable aquaporin PIP1-2 26 284 - -
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2368g00031 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00031 Vium-Chr2368 188986 191345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00031 1 286 Major Intrinsic Protein MIP AT2G37170 77.163 6.54e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00031 K09872 - gmx:100785783 503.827