Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00028 ATGAAGATTCCCTGTTGTTCTTTTTGTACTTGTTTCTCAGCATCGGTCAAAGATCAAGAAACTAAGCACGAAGAGCCAGGTGAAGATGACGATGGAAACTTTCGCATATTCACTTACAGAGAATTGAATTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTATAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTCGATTGAGCTGGATTCCGTAAAAGGAGAGATGGGTTTTGTGGCAGAATTGAATACACTTGCAAATGTGAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGGAAAACAATAGCCTTCGTCACACTTTCTTAGGTTCTGAGCAAAAAAGAATGACATTCAGCTGGGAGGCTCGGAGAGATGTATCAGTTGGTGTGGCCAGAGTGCTTGCCTTTCTTCATGAGGAGCTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGAAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTGTTAAGAGATGAAAAATCCCACATCAGTACACAAGTTGCAGGCACATTAGGTTATCTTGCTCCTGAATATGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTGCTTCTAGAAATTGTGAGTGGCCAAAGAGCAGTAGATGATCATGAAGGTGCGGATCGTTTTATAGTTGAGAAGTCCTGGGCAGCGTACGAGGAAAAAGATCTTTTGAGAATGGTGGATCCAATGCTGAAGATGAACTATCACATGGAAGAAGCTAAACGGTTCCTAATGGTGGGACTTTGTTGCGTGCAAGAAACGGCCAGGGTGAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAAAAACATTGAGATGGAGGAGTTTCAAGTTTCACGACCAGGATTTGTGAATGATATGAGGAACGCCAGAACGAGGAGGCAAGTAAATTCATCGGAGGAATCAAGTGCTAGTGCAGCAGCATCCTTTGCAGATTCCTCCGGATGGAGTACCTCCAATCTTGCTCGTTAG 1134 0.4427 MKIPCCSFCTCFSASVKDQETKHEEPGEDDDGNFRIFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVKGEMGFVAELNTLANVKHQNLVILRGCCVEGAHRYIVYDYMENNSLRHTFLGSEQKRMTFSWEARRDVSVGVARVLAFLHEELQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDDHEGADRFIVEKSWAAYEEKDLLRMVDPMLKMNYHMEEAKRFLMVGLCCVQETARVRPRMSEVVDMLSKNIEMEEFQVSRPGFVNDMRNARTRRQVNSSEESSASAAASFADSSGWSTSNLAR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00028 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vium2368g00028 377 Gene3D Phosphorylase Kinase; domain 1 18 126 - -
Vium2368g00028 377 SMART serkin_6 49 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2368g00028 377 ProSiteProfiles Protein kinase domain profile. 49 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2368g00028 377 Gene3D Transferase(Phosphotransferase) domain 1 127 335 - -
Vium2368g00028 377 SUPERFAMILY Protein kinase-like (PK-like) 31 346 IPR011009 -
Vium2368g00028 377 MobiDBLite consensus disorder prediction 346 377 - -
Vium2368g00028 377 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vium2368g00028 377 FunFam Serine/threonine-protein kinase receptor 18 126 - -
Vium2368g00028 377 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 365 - -
Vium2368g00028 377 CDD STKc_IRAK 55 323 - -
Vium2368g00028 377 FunFam Putative LRR receptor-like serine/threonine-protein kinase 127 333 - -
Vium2368g00028 377 Pfam Protein kinase domain 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00028 Vium-Chr2368 165065 167123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00028 22 340 Receptor kinase-like Gene Family AT1G56120 48.466 8.75e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2368g00028 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00028 - - gmx:100790388 568.54