Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00027 ATGGGCAACGTCTCAAGCGGCGGTGCCAACCACCGTCGCCGGCACAGCGGAGCTTTAAGGCGGAGTCATCCGCCGCCTCCACCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTTGTGTACCAGGGTGCCGCACCTTATCCGAACCCTACCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATGCCTCATCAGCATCATCATCAACAGCATCAACATCATCATCTACAGCATCAACATCATCATCCACAAAATCAACATCAACACCATCTGCACATGGACCCGGCCTGGATTCCAGGGCGTTACCCTTGTGGACCCGTGATGCCTAACCCTGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGAGTCTTAGGCTTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGACTCCATCCTCACACCAGTGAAGGAAAACAATCCTGCTCCGGTGACAGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAATCCGAGTTACTGAAAGTGGGTGATATGGATGTGTACCCTCTAGCAGTAAAGGCAGATGCTTCCCCTGGTAATCATGATGAGTCGGATAGAACTCCAGCATCTGGTAACACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAGCAGAAGCTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGTTTGTCGGAGCCTCGGGATACAATTGTTCATCCCTGCCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGA 1110 0.4955 MGNVSSGGANHRRRHSGALRRSHPPPPPPVTPQPEIAANPFVYQGAAPYPNPTLHYPQYHYPGYYPPAPPMPHQHHHQQHQHHHLQHQHHHPQNQHQHHLHMDPAWIPGRYPCGPVMPNPAPFVEHQKAVTIRNDVNIRKESLRLEPDEGNSSHFLISFSFDATVSGSVTIYFFAKEGEDSILTPVKENNPAPVTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPASGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSAEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00027 369 MobiDBLite consensus disorder prediction 21 35 - -
Vium2368g00027 369 PANTHER MAHOGUNIN 1 364 IPR045194 GO:0061630
Vium2368g00027 369 MobiDBLite consensus disorder prediction 75 92 - -
Vium2368g00027 369 MobiDBLite consensus disorder prediction 239 259 - -
Vium2368g00027 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 364 IPR013083 -
Vium2368g00027 369 MobiDBLite consensus disorder prediction 1 36 - -
Vium2368g00027 369 SMART ring_2 315 353 IPR001841 -
Vium2368g00027 369 FunFam probable E3 ubiquitin-protein ligase LOG2 299 364 - -
Vium2368g00027 369 CDD mRING-HC-C3HC5_MGRN1-like 313 354 IPR045195 -
Vium2368g00027 369 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
Vium2368g00027 369 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Vium2368g00027 369 MobiDBLite consensus disorder prediction 65 92 - -
Vium2368g00027 369 SUPERFAMILY RING/U-box 314 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00027 Vium-Chr2368 151622 156189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00027 35 334 C3H Transcription Factor Family AT3G09770 53.698 1.10e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00027 - - gmx:100807343 560.066