Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00023 ATGTTCAATGTTTTAGGTTTTTCGTTGTTGACAATGGATTCGGTTGCCTACAGGGGATTGCTCTACACATTCTTCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCACCCTCTCGCTTCCGATGGAAATCCTGAAAATGCTGCTGAGTTGTTTGAGCGGGTATCGCAAAGCGTAAAAGTGAAACACTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAAACCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCCGAGAGGAGCTACAAACATTTTCTGGAGTTGAAGCCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTAAAAGTGCTCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCTCAAAATCCTTGGAATTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCTAAGCTCCTTAAAGTGAAGCTGTTAATAGCTGATAAAGACTATGAGGGTGCCATTGCTGAGTCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAAAAAGGTCTTCGCTCAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTCGATTGAAAAATCTACTAAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGTTGCTCTTGCTGTGGACCCTGACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAATAGATGCCTTGGAAAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAGCTCTTAATAGAGGATTGGGAGGGAGCTGTGGATGATATGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGCAGTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTACAAGACTTTGGGAATTTCTAAAACTGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTGGACAAAAGAGAAGAAGCAGAAGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTGAGCGATGAAGACAAACGTGTAAGATATGACAGGGGGGAGGACCTTGAAGAGATGGGAATGGGCGGCGGCGGCGGCGGCGGTTTCAACCCTTTTGGTGGTGGGGGCCAGCAGTTTACCTTTAATTTTGAGGGGGGCTTCCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGAGGGTTTGAATTTCACTTCTGA 1464 0.4324 MFNVLGFSLLTMDSVAYRGLLYTFFILNFVLVCQLILLHPLASDGNPENAAELFERVSQSVKVKHYTEALDDLNAAIEADPNLSKAYLFRASVLRQICRYEQSERSYKHFLELKPGDSAAEKELSQLLQAKSALETAQSLYDLGNFSKSLEFIDKVVLVFSPDCTKAKLLKVKLLIADKDYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRSDPEHSELKKAYFRLKNLLKKSKSAEDNASKGKLRVAVEEFKVALAVDPDHLAHNVHLHLGLCKVLVKLGRGIDALESCSEALKINEELVEALVQRGEAKLLIEDWEGAVDDMRSAAQKSPQDMNIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGMGGGGGGGFNPFGGGGQQFTFNFEGGFPGGGFGGGFPGGFEFHF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00023 487 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 487 IPR044620 -
Vium2368g00023 487 SUPERFAMILY Chaperone J-domain 365 476 IPR036869 -
Vium2368g00023 487 Coils Coil 407 427 - -
Vium2368g00023 487 ProSitePatterns Nt-dnaJ domain signature. 414 433 IPR018253 -
Vium2368g00023 487 SMART tpr_5 50 83 IPR019734 GO:0005515
Vium2368g00023 487 SMART tpr_5 283 316 IPR019734 GO:0005515
Vium2368g00023 487 SMART tpr_5 84 117 IPR019734 GO:0005515
Vium2368g00023 487 SMART tpr_5 199 232 IPR019734 GO:0005515
Vium2368g00023 487 SMART tpr_5 130 163 IPR019734 GO:0005515
Vium2368g00023 487 SMART tpr_5 317 350 IPR019734 GO:0005515
Vium2368g00023 487 Gene3D Tetratricopeptide repeat domain 41 368 IPR011990 GO:0005515
Vium2368g00023 487 Gene3D DnaJ domain 369 478 IPR036869 -
Vium2368g00023 487 PRINTS DnaJ domain signature 409 429 IPR001623 -
Vium2368g00023 487 PRINTS DnaJ domain signature 429 448 IPR001623 -
Vium2368g00023 487 PRINTS DnaJ domain signature 391 406 IPR001623 -
Vium2368g00023 487 PRINTS DnaJ domain signature 373 391 IPR001623 -
Vium2368g00023 487 FunFam DnaJ domain containing protein 41 368 - -
Vium2368g00023 487 ProSiteProfiles dnaJ domain profile. 371 437 IPR001623 -
Vium2368g00023 487 FunFam DnaJ subfamily C member 7 369 478 - -
Vium2368g00023 487 Pfam DnaJ domain 371 434 IPR001623 -
Vium2368g00023 487 SMART dnaj_3 370 429 IPR001623 -
Vium2368g00023 487 CDD DnaJ 371 426 IPR001623 -
Vium2368g00023 487 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Vium2368g00023 487 SUPERFAMILY TPR-like 46 366 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00023 Vium-Chr2368 101415 105471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00023 367 434 C2H2 Transcription Factor Family AT1G74250 47.222 6.10e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00023 K09523 - gmx:100804685 772.696