Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00021 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATCTGTAAAAAGTATGATAAATACGACGTCGAGAAACAAAAGGATTCCAATATCTCCGCTGACGATGCATTCGCAAAACTCTACGCCTCCGTTGATGCCGAAATCGAGACCTTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAAGGCGTCTACTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAAGTTGTTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTATGAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGTACCCAAACAAACGGAAAGTTGGGCAGCTTCTGCCTCACGTCCTGGAATTAAATTTGATTCAGATGGACAATTTGATGATGAATACTTCCATCAAACCGAAGAATCAAGTCGATTTAGGCAGGAGTATGAAATGCGTAAACTGAAACAGGATCAAGGTTTGGATATGATAGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTACCACTGATGGATGAGATTGATGCTAAGGTGGACAAGGCATCTTCCGACCTTAAAAATACCAATGTTAGACTTCGAGACACAGTGAACCAGTGTGCTAAAGAAATGATACGGCATAGAGGACAGATCATTGGATCAATTTGTATGGCATATCTGTATCTCTTGTATTTTCTTGGTTGTATCGTGGTGTGA 804 0.4241 MSVIDILTRVDSICKKYDKYDVEKQKDSNISADDAFAKLYASVDAEIETLLQKAETASKEKSKASTVAINAEIRRTKAKLLEEVPKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAVPKQTESWAASASRPGIKFDSDGQFDDEYFHQTEESSRFRQEYEMRKLKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQCAKEMIRHRGQIIGSICMAYLYLLYFLGCIVV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00021 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vium2368g00021 267 PANTHER SYNTAXIN 46 238 IPR045242 -
Vium2368g00021 267 SMART tSNARE_6 165 232 IPR000727 -
Vium2368g00021 267 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium2368g00021 267 CDD SNARE_Qc 175 230 - -
Vium2368g00021 267 Gene3D - 170 231 - -
Vium2368g00021 267 SUPERFAMILY SNARE fusion complex 164 230 - -
Vium2368g00021 267 Coils Coil 40 60 - -
Vium2368g00021 267 FunFam Putative syntaxin-71-like 170 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00021 Vium-Chr2368 73810 78582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00021 1 235 SNARE and Associated Proteins AT3G09740 74.262 1.54e-131 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00021 K08506 - gmx:100804155 425.631