Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00019 ATGTATATAACACATCTCCATTGTTTGAGGGTGAGCCTGATCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGATCACTATTGCAGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGACAATATGTCTATAGATAACACTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATAATGATCATTTTGTGCATTCGTCTAATGCTGGAGCATTCTTTACAGTGTCAGATAATCACGTACACCAACCTTCTTCTTCCAATTATGACAGACATACATTTAATGTTGATAGTAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCACTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCTACACTTGATTTGGACTCCAACCCATCAAGGACCCATTTATCCACTAATCATTCTCACACTTCCTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCAAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTCCTTGTTGGAAGTGGGGCTACTGTTGGCAATGCTTCTGTGGATGTTGGGTGCTTCCATCATGGTACAAGCAGAAATCCTGCTCCTACTCAAAGTTTTCAAAATAATCAAACTCAGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCAAGCTTGCGCATGGGACATTTGACATCTTTGGATGAAGGATTGCCTATGATAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGATATCGCACATTGACTGAGGAGAGTGGTCTTGCCGAACGATTTGCCTCTGAGGGTTTCTTGGTTATTGAGCGTGCATCGGTGTATGATTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGACTTATGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGACTCTCTGAGGACATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAAACTGCGTGATATGTCTGGAAGAGTACAAGAACTTGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCATTGGCTGAGGATACAAAGGATAAATAA 1647 0.4196 MYITHLHCLRVSLIRTGIICTLINTMCTLITIAGRTSTSENGSFIYPADNMSIDNTSFPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNNDHFVHSSNAGAFFTVSDNHVHQPSSSNYDRHTFNVDSSFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSTDLPISSELWQDKPNIDSQYMHWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNPSRTHLSTNHSHTSYPTLPPVDHSSLVDVSGQTSTLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGATVGNASVDVGCFHHGTSRNPAPTQSFQNNQTQNARGIQSNYSQRSTPTFGASSSLRMGHLTSLDEGLPMIAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEGFLVIERASVYDSRNMLDQHREMRMDIDNMTYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNLDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00019 548 SUPERFAMILY RING/U-box 485 540 - -
Vium2368g00019 548 CDD RING-H2_RNF24-like 495 540 - -
Vium2368g00019 548 MobiDBLite consensus disorder prediction 214 251 - -
Vium2368g00019 548 MobiDBLite consensus disorder prediction 64 91 - -
Vium2368g00019 548 Pfam Ring finger domain 494 537 IPR001841 -
Vium2368g00019 548 SMART ring_2 495 536 IPR001841 -
Vium2368g00019 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Vium2368g00019 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 92 541 IPR045191 GO:0061630
Vium2368g00019 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Vium2368g00019 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Vium2368g00019 548 MobiDBLite consensus disorder prediction 322 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00019 Vium-Chr2368 60013 62877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00019 36 547 C3H Transcription Factor Family AT2G37150 41.075 4.37e-102 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00019 - - gmx:100803627 901.738