Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00018 ATGGTGTCAGATAATCACGTACACCAACCTTCTTCTTCCAATTATGACAGACATACATTTAATGTTGATAGTAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCACTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCTACACTTGATTTGGACTCCAACCCATCAAGGACCCATTTATCCACTAATCATTCTCACACTTCCTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCAAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTCCTTGTTGGAAGTGGGGCTACTGTTGGCAATGCTTCTGTGGATGTTGGGTGCTTCCATCATGGTACAAGCAGAAATCCTGCTCCTACTCAAAGTTTTCAAAATAATCAAACTCAGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCAAGCTTGCGCATGGGACATTTGACATCTTTGGATGAAGGATTGCCTATGATAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGATATCGCACATTGACTGAGGAGAGTGGTCTTGCCGAACGATTTGCCTCTGAGGGTTTCTTGGTTATTGAGCGTGCATCGGTGTATGATTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGACTTATGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGACTCTCTGAGGACATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAAACTGCGTGATATGTCTGGAAGAGTACAAGAACTTGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCATTGGCTGAGGATACAAAGGATAAATAA 1329 0.4236 MVSDNHVHQPSSSNYDRHTFNVDSSFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSTDLPISSELWQDKPNIDSQYMHWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNPSRTHLSTNHSHTSYPTLPPVDHSSLVDVSGQTSTLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGATVGNASVDVGCFHHGTSRNPAPTQSFQNNQTQNARGIQSNYSQRSTPTFGASSSLRMGHLTSLDEGLPMIAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEGFLVIERASVYDSRNMLDQHREMRMDIDNMTYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNLDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00018 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 435 IPR013083 -
Vium2368g00018 442 SUPERFAMILY RING/U-box 379 434 - -
Vium2368g00018 442 MobiDBLite consensus disorder prediction 216 248 - -
Vium2368g00018 442 MobiDBLite consensus disorder prediction 106 145 - -
Vium2368g00018 442 SMART ring_2 389 430 IPR001841 -
Vium2368g00018 442 Pfam Ring finger domain 388 431 IPR001841 -
Vium2368g00018 442 CDD RING-H2_RNF24-like 389 434 - -
Vium2368g00018 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 435 IPR045191 GO:0061630
Vium2368g00018 442 MobiDBLite consensus disorder prediction 108 145 - -
Vium2368g00018 442 ProSiteProfiles Zinc finger RING-type profile. 389 431 IPR001841 -
Vium2368g00018 442 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 354 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00018 Vium-Chr2368 60013 62877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00018 4 441 C3H Transcription Factor Family AT2G37150 41.611 1.33e-87 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00018 - - gmx:100803627 776.163