Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00002 ATGGGGAGGAAGGGAAATTGGTTTTCAAGCGTGAAGAAAGCTCTCAGCCCCGACTCAAAGGAGAAGAAAGATCAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTACAGACTTCTGTCTCATACTCAGAAGCTGATAAGCTGCCACCGCCACCATCTGTTCCTCTGCCAGAAGAGATTAAATTAACTGATATTGAAAATGAAATCAGTCATGATCATGTTGTTGAAGTTGTAACTGCCGTTGAAGCCGAGGTACCTGTTCCTCCTGTTCAGATAGAAACTGTTAGGGTTGAAGCTGCTCGAATTCCTCGTTTTGCTGGCAAACCAAATGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGACTGGTCAGGCTGAAATTACTGATGGAAGGGTCGGTTGTAAAACGCCAAGCCACGAGTACCCTCCGATCTATGCAGACACTGTCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTGGAGGAAAATCAGGCTCTGCAGAGACAGCTCTTACAGAAACATGCAAGAGAGCTTGAGAGTTTGCGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGGAGAGAAAGAGCATTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTTTAAATCCTATGTTCATGGATCCAACAAATCCTGCCTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCCGACCATTAGAGAACCGTAGCCAGGTGGATAAAGAGTTAAATGATCATGGATCCGTGAAAAGCTCAAGCCGCGGCATTACTGGTGGGGAAATCAGCAAGTCATTTGCTCGTTTTCAGCTCAATTCTGAGAAGCACTCTCCAACAGCCAGCCAAAATCCTGGCTCACCCAGCTTTCAGTTCACTCCTTCCAAGCGAGTTTCGGCATCTGCTAAGAAATCAAAGAAGGCAAGTCCAAGGGGCAGCTGGATTACAGACGAGGACTCTAAAAGCTTGGTGAGTGTCCAGTCAGATCGGTTCCGGAGGCACTCGATCGCAGGTTCATCGGTGAGAGACGATGAGAGCCTTGCCAGCTCTCCAGCAATTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAATCGAGGACACAAAGTCCATTAGCCCCAGAAAATGGAAAAACTGAGAAAGGATCCTTTGGGACTGCAAAGAAGCGGCTATCTTTCCCAGCTTCACCTTCCAGGCCAAGGCGCCATTCAGGTCCACCAAAGGTAGAAATTAGCTTAAATGCGGAGTTATCTGTGGACAAAGTTGTGGACAGTTGA 1416 0.4668 MGRKGNWFSSVKKALSPDSKEKKDQKSSKSKKKWFGKQKLQTSVSYSEADKLPPPPSVPLPEEIKLTDIENEISHDHVVEVVTAVEAEVPVPPVQIETVRVEAARIPRFAGKPNDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGSVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSLNPMFMDPTNPAWGWSWLERWMAARPLENRSQVDKELNDHGSVKSSSRGITGGEISKSFARFQLNSEKHSPTASQNPGSPSFQFTPSKRVSASAKKSKKASPRGSWITDEDSKSLVSVQSDRFRRHSIAGSSVRDDESLASSPAIPSYMVPTQSAKAKSRTQSPLAPENGKTEKGSFGTAKKRLSFPASPSRPRRHSGPPKVEISLNAELSVDKVVDS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00002 471 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Vium2368g00002 471 SMART iq_5 114 136 IPR000048 GO:0005515
Vium2368g00002 471 MobiDBLite consensus disorder prediction 319 344 - -
Vium2368g00002 471 MobiDBLite consensus disorder prediction 398 422 - -
Vium2368g00002 471 Gene3D - 97 140 - -
Vium2368g00002 471 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vium2368g00002 471 MobiDBLite consensus disorder prediction 286 305 - -
Vium2368g00002 471 MobiDBLite consensus disorder prediction 319 458 - -
Vium2368g00002 471 MobiDBLite consensus disorder prediction 1 60 - -
Vium2368g00002 471 PANTHER IQ-DOMAIN 5-RELATED 1 452 - -
Vium2368g00002 471 Pfam Protein of unknown function (DUF4005) 383 447 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00002 Vium-Chr2368 7059 11385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00002 1 456 IQD Protein Family AT5G03040 55.274 4.78e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00002 - - gmx:100800080 708.368