Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2368g00001 ATGGCCAACGACTCTTCGTTTCTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCCAGATTCCAGAAAAAAGATAACGATACTGATGCGGCGAAGATTTGGAGCGTTGTCAGAGACGGAAGCGCAAAAACGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCTGAAAATGTTGAAGGATTCAATGTATTTAGAAATTCCGCATCTGTGGCGCAGTCTAGTGGCGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTAAGTAAGAAGAAGAATAAGAAGGAACAAAATCGACAATTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATCCATGTGTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAATTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAACCTGAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGGCAGACTATTCCAGTACTTTTAGCTGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCAGAAAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAACTTGCAAAAAGAAAAAAATTTGGAATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTGCGATTGCGGTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTGGAGTATCTTGTCCTGGATGAATCGGATAAGCTGTTTGAACCCGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATTCGCTCGCTTTTTAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGAAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTAC 1194 0.4146 MANDSSFLFSGIRFNRKKFGADIARFQKKDNDTDAAKIWSVVRDGSAKTREAVEEKTASTKKRKRKGNSSENVEGFNVFRNSASVAQSSGEVQADQESIELSKKKNKKEQNRQFERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFREPTPIQRQTIPVLLAGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2368g00001 398 Gene3D - 117 350 IPR027417 -
Vium2368g00001 398 PANTHER RNA HELICASE 64 397 - -
Vium2368g00001 398 SMART ultradead3 161 358 IPR014001 -
Vium2368g00001 398 MobiDBLite consensus disorder prediction 97 112 - -
Vium2368g00001 398 MobiDBLite consensus disorder prediction 87 112 - -
Vium2368g00001 398 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vium2368g00001 398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Vium2368g00001 398 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Vium2368g00001 398 MobiDBLite consensus disorder prediction 47 70 - -
Vium2368g00001 398 MobiDBLite consensus disorder prediction 45 73 - -
Vium2368g00001 398 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Vium2368g00001 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2368g00001 Vium-Chr2368 6 4978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2368g00001 153 346 Eukaryotic Initiation Factors Gene Family AT5G11200 29.648 4.87e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2368g00001 K14779 - vum:124830243 773.467