Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2366g00001 ATGGAGCTCGATGTTTGCATGAATGGTGCTTGCAAGAATGGCTATGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCTAGGCTCTGCGATAAGTGCGGATCTGCATATGCCAATTCAATTTTCTGTGAAAAATTCCACCTGCATCAAACTGGTTGGAGAGAGTGCAACTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAGTACCTCGATTTTGGAGGTATAGGTTGCTCAACCTGTTTGAGGGCTTCTCCATTTCCTTTGATACAGGAGACTGGAAACTCTATTAGGTCTATTAGATCAGTAAAAAATCATGCTAGTGATCGTCATACAGAACATATTGATGATAGGCTATTCCTTGATGGTTCTAGCAAACGAAAACCTATGCACATGCGTAGAATTGTGGATGGTAGAGAATCCAGCCGTTGGCCTCAAGTTAAGAGAGATGACATACATTCCTGTATTGATCTAAGCAGAGAAGAAATGAGATTTTCAAATGTGATGAAACCGTCTAATCATTCATTAAAGTTTACTGCATTAGAAAATAACAGACCAACATGGGAGAATAGAAGTATGCACAGATCAAGTTCATTGAATATTTCTCTGGGAGCCTCATCAGGAAACCCTGTGCTACCTTCTGCTTCAGCGGTTGCAGCAGAAGGGAGATTTGATGGTAAAACATCATCTTCTTCCTTTCATCAAGGGCAAAGATCTCTCTCCATTATGCCTAAACCATTGATGAATGCAATAAACATAAATATGGAATCAAGCAATGGAATGATTTCTCAAGAGCGTGTTGCACGGCCACCTACTGATGGGAAAGGCAAGAATATGTTACTTTCTCGATACTGGCCAAGGATTACAGACCAAGAGCTTCAGCAATTATCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTGCCAAAATCATGCGCTGAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGAGTAACCCCATGCATACAGGCCTTGCAATTAAATGCTGGCGACATTGTGATATTTAGTCGAATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGAAGGGCATCAGATTCTACAGATACACAGGTTGATGCTTCTGCCGCTCATTCCAATGTTTTATCGACAAAGGAAACAACCATTTCTGGTGCAACTGCTGGAAATAGTTATCATGATCTTCTCCAGGCAAGGAAAGGGAATGGTGATCCTTACTTAAATAAATGTTCAGAGCATTTCCGTTTGGGTACTGCTGGCATTGCTGAGCCTCTTCGAACTGAAAATTCTGAGATTGTAAACAAAGATTTGGTGCAACTACCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGACCTATGTGCAAGAGGTTGCTCATACACAACGAAGATGCCAAGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGACTTTCTTTGTCCAGCGCCTAGTATTAAGTCCAATATTGTAACAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCGGTCTTTGGGAAGAGAACTACAATAAATGCTCGTTCATCTGGGTCTTTGAGCTTTGCATCAGAGGAAATGAGTCCAAAGGAATTAGATAATATTCCAGTTATCAGAAAAGGAGTTTTGGAAGATGATGTTGCTGACCGTGGTGATTCATCAGCTGGAGCCACCACCAAATATCCAAGGCACCGTTCAGGATGCACTTGCATTGTGTGCATTCAAGCCTCAAGTGGAAAAGGGAGACATAGCCCTCCCTGCATCACCGTGGAACGCCGTTTGGACACCCTTCTGACGCGTAAGAAGCAACGCCTTGGTACCCAGAAAGATGAAGATGAAGGAGATGGTGCATGTCTCTCTGAGAAAGAGGGAAACATAAACAAAGGTTGTCTTAAGAAGGGTGAACTCAGTGCAGGACAGATAGACCTGAATTGTCGTCCCAATCTCGATGAAGACATGCAAGTGGATATATGA 2154 0.4225 MELDVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECNFCNKSIHCGCIISRFSFEYLDFGGIGCSTCLRASPFPLIQETGNSIRSIRSVKNHASDRHTEHIDDRLFLDGSSKRKPMHMRRIVDGRESSRWPQVKRDDIHSCIDLSREEMRFSNVMKPSNHSLKFTALENNRPTWENRSMHRSSSLNISLGASSGNPVLPSASAVAAEGRFDGKTSSSSFHQGQRSLSIMPKPLMNAININMESSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDIVIFSRIDPGGKFVLGFRRASDSTDTQVDASAAHSNVLSTKETTISGATAGNSYHDLLQARKGNGDPYLNKCSEHFRLGTAGIAEPLRTENSEIVNKDLVQLPISVSEKTQNIGPMCKRLLIHNEDAKELRVTWEEAQDFLCPAPSIKSNIVTIEDQEFEEYEEPPVFGKRTTINARSSGSLSFASEEMSPKELDNIPVIRKGVLEDDVADRGDSSAGATTKYPRHRSGCTCIVCIQASSGKGRHSPPCITVERRLDTLLTRKKQRLGTQKDEDEGDGACLSEKEGNINKGCLKKGELSAGQIDLNCRPNLDEDMQVDI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2366g00001 717 Pfam B3 DNA binding domain 318 418 IPR003340 GO:0003677
Vium2366g00001 717 ProSiteProfiles B3 DNA-binding domain profile. 318 419 IPR003340 GO:0003677
Vium2366g00001 717 SMART B3_2 318 419 IPR003340 GO:0003677
Vium2366g00001 717 CDD B3_DNA 316 417 IPR003340 GO:0003677
Vium2366g00001 717 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 601 714 - -
Vium2366g00001 717 Gene3D - 296 423 IPR015300 -
Vium2366g00001 717 SUPERFAMILY DNA-binding pseudobarrel domain 315 417 IPR015300 -
Vium2366g00001 717 FunFam B3 domain-containing transcription repressor VAL1 296 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2366g00001 Vium-Chr2366 8734 15499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2366g00001 3 707 B3 DNA Binding Superfamily AT4G32010 40.485 2.98e-170 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium2366g00001 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2366g00001 K09287 - vra:106763363 1340.87