Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium235g00004 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAAAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGGGAAGTGGATGGTCACATACCCAATTACCCCAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGACGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACACATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACTGGCTGGAGTGTATTTGTCAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAGAATCAACTTCTTTTGGGAATACGAAGAGCCAATCGACCACAAACGGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCAAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATTAAAGCTGTGTACCACACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTACGCAGGTATATGGGTACTATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCTCTTAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGTTATGAAGCGACGAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCCGAGTTTTCAAGGATCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAATTGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATCTGATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTAACTTCTAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCACAGCATCTCCTTCAGAAATCACACAATCGTGAAGACCAAACACAACAGCAGCAGCAGCAGCAGCACGCTTATCAAGATACTGTTTTACTTCAAAGTGATCAGCTGCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACCGTTTCTCCAGGACAAAATATGCTGAGTTCACTTTGTCCTGAAGGGAGTGGCAGTCTCTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAACAGTTACCCCAACAACCATGGGCCCCAAAGTTTACACCTTTGCAGGTCAATACTTTTGGCAACTCAATGCCCCACGTGCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACACTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCATCGGCTGACACTGATGCATCAGCAATGCCATTAGTGGAGTCTGGATTCCAAACTCCTCTATACCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAGAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGGTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAGTAA 2370 0.4629 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGSYEATNGLMWLRGGPGDQGLNSPSFQGSGLLPWMQQRMDPTLLGIDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVTSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQQQQQHAYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTEQQLPQQPWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLVESGFQTPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWE 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium235g00004 789 MobiDBLite consensus disorder prediction 545 562 - -
Vium235g00004 789 FunFam Auxin response factor 292 364 - -
Vium235g00004 789 SUPERFAMILY CAD & PB1 domains 719 789 - -
Vium235g00004 789 FunFam Auxin response factor 126 230 - -
Vium235g00004 789 SMART B3_2 128 230 IPR003340 GO:0003677
Vium235g00004 789 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium235g00004 789 Gene3D - 717 789 - -
Vium235g00004 789 Gene3D - 292 364 - -
Vium235g00004 789 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vium235g00004 789 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vium235g00004 789 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 789 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium235g00004 789 Gene3D - 126 229 IPR015300 -
Vium235g00004 789 MobiDBLite consensus disorder prediction 545 564 - -
Vium235g00004 789 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vium235g00004 789 ProSiteProfiles PB1 domain profile. 721 789 IPR000270 GO:0005515
Vium235g00004 789 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium235g00004 Vium-Chr235 52334 63264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium235g00004 98 789 B3 DNA Binding Superfamily AT5G37020 68.616 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium235g00004 B3 5.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium235g00004 - - gmx:100780393 1498.8