Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium235g00003 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAAAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGGGAAGTGGATGGTCACATACCCAATTACCCCAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGACGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACACATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACTGGCTGGAGTGTATTTGTCAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAGAATCAACTTCTTTTGGGAATACGAAGAGCCAATCGACCACAAACGGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCAAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATTAAAGCTGTGTACCACACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTACGCAGGTATATGGGTACTATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTGTGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCTCTTAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGTTATGAAGCGACGAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCCGAGTTTTCAAGGATCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAATTGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATCTGATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTAACTTCTAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCACAGCATCTCCTTCAGAAATCACACAATCGTGAAGACCAAACACAACAGCAGCAGCAGCAGCAGCACGCTTATCAAGATACTGTTTTACTTCAAAGTGATCAGCTGCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACCGTTTCTCCAGGACAAAATATGCTGAGTTCACTTTGTCCTGAAGGGAGTGGCAGTCTCTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAACAGTTACCCCAACAACCATGGGCCCCAAAGTTTACACCTTTGCAGGTCAATACTTTTGGCAACTCAATGCCCCACGTGCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACACTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCATCGGCTGACACTGATGCATCAGCAATGCCATTAGTGGAGTCTGGATTCCAAACTCCTCTATACCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAGAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGGTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTGAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2544 0.4595 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGSYEATNGLMWLRGGPGDQGLNSPSFQGSGLLPWMQQRMDPTLLGIDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVTSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQQQQQHAYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTEQQLPQQPWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLVESGFQTPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium235g00003 847 MobiDBLite consensus disorder prediction 545 562 - -
Vium235g00003 847 SUPERFAMILY CAD & PB1 domains 719 795 - -
Vium235g00003 847 Gene3D - 717 810 - -
Vium235g00003 847 FunFam Auxin response factor 716 810 - -
Vium235g00003 847 Gene3D - 292 364 - -
Vium235g00003 847 MobiDBLite consensus disorder prediction 814 833 - -
Vium235g00003 847 SMART B3_2 128 230 IPR003340 GO:0003677
Vium235g00003 847 FunFam Auxin response factor 292 364 - -
Vium235g00003 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vium235g00003 847 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Vium235g00003 847 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vium235g00003 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vium235g00003 847 Gene3D - 126 229 IPR015300 -
Vium235g00003 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vium235g00003 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium235g00003 847 MobiDBLite consensus disorder prediction 545 564 - -
Vium235g00003 847 Pfam AUX/IAA family 718 805 IPR033389 -
Vium235g00003 847 FunFam Auxin response factor 126 230 - -
Vium235g00003 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 810 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium235g00003 Vium-Chr235 51923 63262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium235g00003 98 818 B3 DNA Binding Superfamily AT5G37020 68.630 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium235g00003 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium235g00003 - - gmx:100780393 1607.42