Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00048 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTCTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAAATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCCGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACCCATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGACGAAGATGAGCACAGACAGCCTTCGGATATAGACATTGAAAGGGAAGAGGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTCAAGAGAGTAAAGTCAGGCGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTTAAAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.422 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEDEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVKSGDLWVFTDGRDVVDMATVTRENLKRLFMYIDKLPLIIPDSLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00048 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vium2356g00048 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Vium2356g00048 247 SMART ring_2 151 188 IPR001841 -
Vium2356g00048 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vium2356g00048 247 FunFam RING/U-box superfamily protein 119 198 - -
Vium2356g00048 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Vium2356g00048 247 SUPERFAMILY RING/U-box 145 195 - -
Vium2356g00048 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 214 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00048 Vium-Chr2356 303331 309319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00048 151 206 C3H Transcription Factor Family AT5G01960 41.071 4.70e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00048 K25840 - gmx:100789769 485.723