Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00033 ATGGGGTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGACTTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAGCAGCAACAGACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCCCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGCGGTGGTAGAAAGAATAAGCGAGCCAAGAAATCGACCACAGCTACAACCACCACCTCAAATGGAAGCATGGATGGTGAGTTGAGAACCCACGTTACAATTCCTCCTCTTGCAGTGGATGATCATCACAAAACCACACCTTCCTCTCTCTACCAATCTCTGTGCCTGCCACAACAGAATCCTAATACCAAAGTTTCCGAAGGCAAGGACTTTGGTATTGGCAATGGAATCTTTCTGAGTTCAACCGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCTTTCACAACCTCAAACTCCTTTGACACAAACACGTGTGCAGTATCCAACTCTCTGCAATCCTCCAGTGTGTATAACTACGGTGACGAGTTTAAAATACTGGAAGAGCCAACCGTGAACAGTACAATGGCCTGCACTGGTGCTGGCACCAGGACACAACCATGGGAGATCGCAGCGACAAGTTCTGGTTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATCGATTCGTTGGTCTCAACCGATCCAAATAATCCTTGGGATGATTCCGACATCAAACCCTGA 837 0.4707 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTATTTTSNGSMDGELRTHVTIPPLAVDDHHKTTPSSLYQSLCLPQQNPNTKVSEGKDFGIGNGIFLSSTVPFPQNQSLLFPFTTSNSFDTNTCAVSNSLQSSSVYNYGDEFKILEEPTVNSTMACTGAGTRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00033 278 MobiDBLite consensus disorder prediction 103 118 - -
Vium2356g00033 278 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vium2356g00033 278 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vium2356g00033 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 197 IPR045174 GO:0003700|GO:0006355
Vium2356g00033 278 MobiDBLite consensus disorder prediction 26 47 - -
Vium2356g00033 278 MobiDBLite consensus disorder prediction 84 119 - -
Vium2356g00033 278 MobiDBLite consensus disorder prediction 26 46 - -
Vium2356g00033 278 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00033 Vium-Chr2356 205487 206892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00033 29 133 C2C2-Dof Transcription Factor Family AT5G60200 50.000 1.45e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2356g00033 zf-Dof 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00033 - - vra:106774613 523.472