Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00026 ATGAATAGCATGGCTTCATCTTCAGAATATCATACTCATCAGCACCCTCATCTTCCACCGGGGTTTCGGTTCCACCCCACAGACGAGGAACTGGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTCGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCGTGGGAGCTCCCAAGTAAAGCAACGTTTGGCGAGCAAGAGTGGTACTTTTTCAGTCCGAGGGATAGGAAATACCCAAATGGGGCGAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCTACCGGAACTGACAGGCCCATTCTTGCATCTCATGGCCACCACAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGCAAACCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACCGGCTTGTTGGCAGTTCCTCAAATTCTTCCTCAAAGCCACCTTCTCTGCCTGCAGATCATGCACGTAGTAGCAAGAAAAACTCCCTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAACAACAGTACCATGATGCCAAGGTTTCCTTTGATGGAGCAGAATAAGGAGCTTTCTTCGGAGAGCACTATGCTACCAATGATGTCAACTTTGTCAATGGCCAACAATAACACCACTCAGAATTCCAAAGCCGGGACTTCAAGAAGCGCAAGTTATGGACCCATGGGACTAGAAAATGATGACAGCTTCTTTGATGGAATCTTAGGAGTTGACCATAGCATGCAGCAAGATGTTTCTGATTCCCACCAAGTCTCTTCAAAGGGAATCTACCCTGTGAAACGAGCACTCTCGTCACAGTTTTGGAATGACACAAGGTCATCCTCTTCTAGCAGGAGATTCCATTGTGATCTCAATGCTGGAAGCAACACTGTAGAGGAAGAAAGTTCCTTCGTTTCACTGCTTAACCACCTTCCACAGAACACAACGTTTCACCCAAATGCACTTCTTGGCCCAGTTAGTAATGATGTATTGAGGCAACAGTTTCAGCTTCCAAACATGAACTGGAATGTTTAG 1068 0.4635 MNSMASSSEYHTHQHPHLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILASHGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVGSSSNSSSKPPSLPADHARSSKKNSLRLDDWVLCRIYKKNNSTMMPRFPLMEQNKELSSESTMLPMMSTLSMANNNTTQNSKAGTSRSASYGPMGLENDDSFFDGILGVDHSMQQDVSDSHQVSSKGIYPVKRALSSQFWNDTRSSSSSRRFHCDLNAGSNTVEEESSFVSLLNHLPQNTTFHPNALLGPVSNDVLRQQFQLPNMNWNV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00026 355 MobiDBLite consensus disorder prediction 1 21 - -
Vium2356g00026 355 MobiDBLite consensus disorder prediction 148 167 - -
Vium2356g00026 355 PANTHER NAC TRANSCRIPTION FACTOR 56 18 221 - -
Vium2356g00026 355 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Vium2356g00026 355 Gene3D NAC domain 27 190 IPR036093 GO:0003677|GO:0006355
Vium2356g00026 355 SUPERFAMILY NAC domain 10 185 IPR036093 GO:0003677|GO:0006355
Vium2356g00026 355 ProSiteProfiles NAC domain profile. 18 185 IPR003441 GO:0003677|GO:0006355
Vium2356g00026 355 FunFam NAC transcription factor 56 27 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00026 Vium-Chr2356 146461 148452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00026 15 354 NAC Transcription Factor Family AT1G61110 54.913 1.64e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2356g00026 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00026 - - gmx:100806369 575.474