Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00024 ATGGACAACATCATCTACACTTTAGTTTTTATACTTATTCTATCTTTGAAGGCTAATACTGTTTGTTCTAGAGAGAGACAATGGGGTGGTGTGGGGAGAATAGGTTCTGGTGATAATAATAATCTTATGGCTGATCTTGTGACAGACTTGCCTGGCCAACCTCCTGTAGATTTTCAGCACTATGCTGGATACGTCACAGTCAACGAAACCAGTGGAAGAGAACTCTTTTACTGGTTCTACGAAGCCATGACCAAACCTCAAGAAAAACCTTTGGTTCTGTGGCTTAATGGAGGTCCTGGGTGTTCGTCTGTTGGATATGGAGCAACACAGGAAATTGGACCATTTTTAGTGAACACAGATGGCAAAAGCCTTATGTTTAATAACTTCACATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACTAGCGAATATGCACAATTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCATTGTATAGAACAAGGACATTTTACATAGCTGGAGAAAGCTATGCAGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCAAGACAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGCAACCCTGAAACATCTGATGCTGAGGATTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACATACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGACCCTTGGAGTAACAAAGATTGTAGTCAAGGGGTGGATGAAGTTCTCAAACAGTACAATGAAATCGATATCTACAGCCTCTACACCTCCACATGCTTCGCCAGTACAGCACGTTCAAACGATCGATCCATGCAAATGGTCATGCTTCGCTCATCTAAAATGATGCCAAGAATCATGGGTGGTTATGACCCATGTTTGGATGACTATGCTAAAACATTTTACAATAAACCAGATGTTCAGAAGGCTCTCCATGCGAGTGATGGGCAAAATCTCAGGAATTGGAGTATTTGCAATGACAGCATATTCAAGAGCTGGAAACAATCACAGACTTCTGTTATCCCAATCTACAAGAAGCTGATTTCAGCTGGACTTAAGATTTGGATTTACAGTGGAGACACTGATGGAAGGGTTCCAGTGCTGTCCACAAGATACAGCTTAAGTATTCTAGATTTGCCAATCACCAAGAAATGGAGACCTTGGTACCATCAAAAGGAGGTAAGAGATCATGAATTCAAGGCACACTGCTTCCTTTTCTTATTTAAGAATTATCTATATACTGTCTTTGACCTGGAACAGGTAAGTGGGTGGTACCAGGAATACGAGGGGCTAACGTTTGCGACATTTCGGGGAGCTGGCCATGCAGTGCCATGTTTCAAACCAAGCAACTCACTCGCATTCTTCTCCTCCTTTCTTAGAGCACAATCACCACCCTCTACTAAATAA 1521 0.4208 MDNIIYTLVFILILSLKANTVCSRERQWGGVGRIGSGDNNNLMADLVTDLPGQPPVDFQHYAGYVTVNETSGRELFYWFYEAMTKPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVNTDGKSLMFNNFTWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPLYRTRTFYIAGESYAGKYVPELAELIQDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNKDCSQGVDEVLKQYNEIDIYSLYTSTCFASTARSNDRSMQMVMLRSSKMMPRIMGGYDPCLDDYAKTFYNKPDVQKALHASDGQNLRNWSICNDSIFKSWKQSQTSVIPIYKKLISAGLKIWIYSGDTDGRVPVLSTRYSLSILDLPITKKWRPWYHQKEVRDHEFKAHCFLFLFKNYLYTVFDLEQVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLRAQSPPSTK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00024 506 FunFam Carboxypeptidase 378 499 - -
Vium2356g00024 506 ProSitePatterns Serine carboxypeptidases, serine active site. 190 197 IPR018202 GO:0004185
Vium2356g00024 506 Gene3D - 378 499 - -
Vium2356g00024 506 SUPERFAMILY alpha/beta-Hydrolases 45 499 IPR029058 -
Vium2356g00024 506 Gene3D alpha/beta hydrolase 42 300 IPR029058 -
Vium2356g00024 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Vium2356g00024 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Vium2356g00024 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Vium2356g00024 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Vium2356g00024 506 FunFam Carboxypeptidase 41 300 - -
Vium2356g00024 506 Pfam Serine carboxypeptidase 51 498 IPR001563 GO:0004185|GO:0006508
Vium2356g00024 506 Gene3D - 331 367 - -
Vium2356g00024 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 46 486 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00024 Vium-Chr2356 133420 137031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00024 336 500 Calmodulin-binding Proteins AT2G22960 28.313 1.16e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00024 K16297 - gmx:100819700 880.552