Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00023 ATGGTGCAGACTCTGAACGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGGTCTTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTACTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCATGTGTGGGAAAATGAAAAAATGACGCCAAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGATGGAATGCGCTCCATTCTCAGTGGAGGGATATCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGTACAGGTCAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATACCTTACCAAAATCCTGCTCACAGTGATGATGTTGAGTTCAATGTAGTTCAAGAGATGGAACAAAAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTACTGAAGTGTGAGGATAGTGTTACATTCACAACGACTGGGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGAGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACGTCAATTGTCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATCAATTGAACATAAAAGTATTGATTCTCAGCTTTCAAAAGGAAGTACCGACAGATCCAATATGGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCGCGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCGGATGGACTGTTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCTAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATTTGTCTTGTATAACTCCAAACAAAAACATGAATTTGTTAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGTCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTACGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGAACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATTCCGGAGGATACTACTGGTGGCCTCGGCAGCTCATCTTCTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAAGCAAAATGTGTTAGAGAGAAGCTCTAATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTCGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCTTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3381 0.4046 MVQTLNENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPTVANASDCLFNGAYPHVWENEKMTPNTKVNKMELFTDTSDGMRSILSGGISFQDNQYTFQDSKYASCFPGNVLFEDSAPVQHSTCASYISSTGQSLNVKTDRDGLIIPYQNPAHSDDVEFNVVQEMEQKPGTFPAVGSQGNDLLKCEDSVTFTTTGKAKYYQDAIGGAANYFPGIMRDLNLKPFDKSLYNLQTSIVSGKLYNCVMTEGEGKSIEHKSIDSQLSKGSTDRSNMEDESDVCIIEDISHPAPVSRSAELGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCITPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSTMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSRPQCCAPQSNSVHSIPEDTTGGLGSSSSDRMKSSNECPEKQNVLERSSNDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00023 1126 Pfam SNF2-related domain 397 775 IPR000330 GO:0005524|GO:0140658
Vium2356g00023 1126 SMART helicmild6 985 1068 IPR001650 -
Vium2356g00023 1126 Pfam Zinc finger, C3HC4 type (RING finger) 814 850 IPR018957 GO:0046872
Vium2356g00023 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 1125 IPR027417 -
Vium2356g00023 1126 ProSitePatterns Zinc finger RING-type signature. 829 838 IPR017907 -
Vium2356g00023 1126 SMART ultradead3 373 675 IPR014001 -
Vium2356g00023 1126 Gene3D - 346 439 IPR038718 -
Vium2356g00023 1126 ProSiteProfiles Zinc finger RING-type profile. 814 853 IPR001841 -
Vium2356g00023 1126 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 470 558 - -
Vium2356g00023 1126 CDD DEXDc_SHPRH-like 377 698 - -
Vium2356g00023 1126 CDD SF2_C_SNF 970 1078 - -
Vium2356g00023 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 698 IPR027417 -
Vium2356g00023 1126 Gene3D - 582 699 IPR038718 -
Vium2356g00023 1126 Gene3D - 463 561 IPR038718 -
Vium2356g00023 1126 SMART ring_2 814 852 IPR001841 -
Vium2356g00023 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 955 1121 IPR001650 -
Vium2356g00023 1126 MobiDBLite consensus disorder prediction 924 966 - -
Vium2356g00023 1126 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 228 1125 - -
Vium2356g00023 1126 MobiDBLite consensus disorder prediction 553 573 - -
Vium2356g00023 1126 MobiDBLite consensus disorder prediction 553 588 - -
Vium2356g00023 1126 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 580 710 - -
Vium2356g00023 1126 SUPERFAMILY RING/U-box 813 860 - -
Vium2356g00023 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 877 IPR013083 -
Vium2356g00023 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 392 660 IPR014001 -
Vium2356g00023 1126 Gene3D - 713 1125 IPR027417 -
Vium2356g00023 1126 Pfam Helicase conserved C-terminal domain 966 1068 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00023 Vium-Chr2356 116181 123498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00023 267 1125 RAD5 or RAD16-like Gene Family AT1G61140 59.752 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2356g00023 SNF2_N 4.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00023 - - gmx:100805307 1829.68