Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00022 ATGGACCATGAAGGTGATGATTTTGACTTCACGGAAAGGACAGGAGTTTCCAATTGTGAGATGCCCGCTTACATAGGCACAAGGTTCCCTGATCCTAAGGTGAATTCAACCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGAATATGTGGAAGTGTGAAAATGATAACCCAATCAAGCATGTAGGATATGGTGCAGACTCTGAACCTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGCAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGGTCTTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTACTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCATGTGTGGGAAAATGAAAAAATGACGCCAAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGATGGAATGCGCTCCATTCTCAGTGGAGGGATATCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGTACAGGTCAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATACCTTACCAAAATCCTGCTCACAGTGATGATGTTGAGTTCAATGTAGTTCAAGAGATGGAACAAAAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTACTGAAGTGTGAGGATAGTGTTACATTCACAACGACTGGGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGAGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACGTCAATTGTCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATCAATTGAACATAAAAGTATTGATTCTCAGCTTTCAAAAGGAAGTACCGACAGATCCAATATGGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCGCGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCGGATGGACTGTTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCTAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATTTGTCTTGTATAACTCCAAACAAAAACATGAATTTGTTAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGTCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTACGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGAACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATTCCGGAGGATACTACTGGTGGCCTCGGCAGCTCATCTTCTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAAGCAAAATGTGTTAGAGAGAAGCTCTAATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTCGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCTTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3666 0.4043 MDHEGDDFDFTERTGVSNCEMPAYIGTRFPDPKVNSTNVAVCGDSLKLNMWKCENDNPIKHVGYGADSEPASHGSIIENIDVKFDDYETYTQEITGPSGKQENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPTVANASDCLFNGAYPHVWENEKMTPNTKVNKMELFTDTSDGMRSILSGGISFQDNQYTFQDSKYASCFPGNVLFEDSAPVQHSTCASYISSTGQSLNVKTDRDGLIIPYQNPAHSDDVEFNVVQEMEQKPGTFPAVGSQGNDLLKCEDSVTFTTTGKAKYYQDAIGGAANYFPGIMRDLNLKPFDKSLYNLQTSIVSGKLYNCVMTEGEGKSIEHKSIDSQLSKGSTDRSNMEDESDVCIIEDISHPAPVSRSAELGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCITPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSTMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSRPQCCAPQSNSVHSIPEDTTGGLGSSSSDRMKSSNECPEKQNVLERSSNDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00022 1221 CDD DEXDc_SHPRH-like 472 793 - -
Vium2356g00022 1221 Gene3D - 441 534 IPR038718 -
Vium2356g00022 1221 Gene3D - 558 656 IPR038718 -
Vium2356g00022 1221 Gene3D - 677 794 IPR038718 -
Vium2356g00022 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 755 IPR014001 -
Vium2356g00022 1221 MobiDBLite consensus disorder prediction 1019 1061 - -
Vium2356g00022 1221 Gene3D - 808 1220 IPR027417 -
Vium2356g00022 1221 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 675 805 - -
Vium2356g00022 1221 MobiDBLite consensus disorder prediction 648 668 - -
Vium2356g00022 1221 MobiDBLite consensus disorder prediction 648 683 - -
Vium2356g00022 1221 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 310 1220 - -
Vium2356g00022 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 793 IPR027417 -
Vium2356g00022 1221 ProSiteProfiles Zinc finger RING-type profile. 909 948 IPR001841 -
Vium2356g00022 1221 Pfam Helicase conserved C-terminal domain 1061 1163 IPR001650 -
Vium2356g00022 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 1220 IPR027417 -
Vium2356g00022 1221 Pfam Zinc finger, C3HC4 type (RING finger) 909 945 IPR018957 GO:0046872
Vium2356g00022 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1050 1216 IPR001650 -
Vium2356g00022 1221 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 565 653 - -
Vium2356g00022 1221 SMART helicmild6 1080 1163 IPR001650 -
Vium2356g00022 1221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 906 972 IPR013083 -
Vium2356g00022 1221 SMART ultradead3 468 770 IPR014001 -
Vium2356g00022 1221 Pfam SNF2-related domain 492 870 IPR000330 GO:0005524|GO:0140658
Vium2356g00022 1221 CDD SF2_C_SNF 1065 1173 - -
Vium2356g00022 1221 ProSitePatterns Zinc finger RING-type signature. 924 933 IPR017907 -
Vium2356g00022 1221 SMART ring_2 909 947 IPR001841 -
Vium2356g00022 1221 SUPERFAMILY RING/U-box 908 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00022 Vium-Chr2356 114572 123498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00022 362 1220 RAD5 or RAD16-like Gene Family AT1G61140 59.685 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2356g00022 SNF2_N 5.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00022 - - gmx:100805307 1968.36