Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00021 ATGATGGCGGATGAGGGATTAGGCTACGCGTGCTTCTTGGACGGTGACGGTCACGCCGCCGATGACGACAAGTTTTGTATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGATACCGATCCCTCTGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATATCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAACGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGCGGTTACATGGACCATGAAGGTGATGATTTTGACTTCACGGAAAGGACAGGAGTTTCCAATTGTGAGATGCCCGCTTACATAGGCACAAGGTTCCCTGATCCTAAGGTGAATTCAACCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGAATATGTGGAAGTGTGAAAATGATAACCCAATCAAGCATGTAGGATATGGTGCAGACTCTGAACCTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGCAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGGTCTTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTACTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCATGTGTGGGAAAATGAAAAAATGACGCCAAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGATGGAATGCGCTCCATTCTCAGTGGAGGGATATCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGTACAGGTCAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATACCTTACCAAAATCCTGCTCACAGTGATGATGTTGAGTTCAATGTAGTTCAAGAGATGGAACAAAAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTACTGAAGTGTGAGGATAGTGTTACATTCACAACGACTGGGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGAGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACGTCAATTGTCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATCAATTGAACATAAAAGTATTGATTCTCAGCTTTCAAAAGGAAGTACCGACAGATCCAATATGGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCGCGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCGGATGGACTGTTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCTAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATTTGTCTTGTATAACTCCAAACAAAAACATGAATTTGTTAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGTCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTACGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGAACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATTCCGGAGGATACTACTGGTGGCCTCGGCAGCTCATCTTCTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAAGCAAAATGTGTTAGAGAGAAGCTCTAATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTCGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCTTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3963 0.4095 MMADEGLGYACFLDGDGHAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDDFDFTERTGVSNCEMPAYIGTRFPDPKVNSTNVAVCGDSLKLNMWKCENDNPIKHVGYGADSEPASHGSIIENIDVKFDDYETYTQEITGPSGKQENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPTVANASDCLFNGAYPHVWENEKMTPNTKVNKMELFTDTSDGMRSILSGGISFQDNQYTFQDSKYASCFPGNVLFEDSAPVQHSTCASYISSTGQSLNVKTDRDGLIIPYQNPAHSDDVEFNVVQEMEQKPGTFPAVGSQGNDLLKCEDSVTFTTTGKAKYYQDAIGGAANYFPGIMRDLNLKPFDKSLYNLQTSIVSGKLYNCVMTEGEGKSIEHKSIDSQLSKGSTDRSNMEDESDVCIIEDISHPAPVSRSAELGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCITPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSTMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSRPQCCAPQSNSVHSIPEDTTGGLGSSSSDRMKSSNECPEKQNVLERSSNDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00021 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 892 IPR027417 -
Vium2356g00021 1320 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Vium2356g00021 1320 Gene3D - 907 1319 IPR027417 -
Vium2356g00021 1320 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 405 1319 - -
Vium2356g00021 1320 Gene3D - 657 754 IPR038718 -
Vium2356g00021 1320 Gene3D - 777 893 IPR038718 -
Vium2356g00021 1320 Pfam Zinc finger, C3HC4 type (RING finger) 1008 1044 IPR018957 GO:0046872
Vium2356g00021 1320 Pfam Helicase conserved C-terminal domain 1160 1262 IPR001650 -
Vium2356g00021 1320 SMART ultradead3 567 869 IPR014001 -
Vium2356g00021 1320 ProSiteProfiles Zinc finger RING-type profile. 1008 1047 IPR001841 -
Vium2356g00021 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1319 IPR027417 -
Vium2356g00021 1320 Pfam SNF2-related domain 591 969 IPR000330 GO:0005524|GO:0140658
Vium2356g00021 1320 Gene3D - 540 633 IPR038718 -
Vium2356g00021 1320 MobiDBLite consensus disorder prediction 747 767 - -
Vium2356g00021 1320 MobiDBLite consensus disorder prediction 747 782 - -
Vium2356g00021 1320 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 664 752 - -
Vium2356g00021 1320 SUPERFAMILY RING/U-box 1007 1054 - -
Vium2356g00021 1320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1005 1071 IPR013083 -
Vium2356g00021 1320 SMART ring_2 1008 1046 IPR001841 -
Vium2356g00021 1320 MobiDBLite consensus disorder prediction 1118 1160 - -
Vium2356g00021 1320 CDD SF2_C_SNF 1164 1272 - -
Vium2356g00021 1320 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 854 IPR014001 -
Vium2356g00021 1320 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1149 1315 IPR001650 -
Vium2356g00021 1320 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 774 904 - -
Vium2356g00021 1320 CDD DEXDc_SHPRH-like 571 892 - -
Vium2356g00021 1320 SMART helicmild6 1179 1262 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00021 Vium-Chr2356 114232 123498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00021 461 1319 RAD5 or RAD16-like Gene Family AT1G61140 59.685 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2356g00021 SNF2_N 6.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00021 - - gmx:100805307 1968.36