Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00020 ATGATGGCGGATGAGGGATTAGGCTACGCGTGCTTCTTGGACGGTGACGGTCACGCCGCCGATGACGACAAGTTTTGTATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGATACCGATCCCTCTGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATATCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAACGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGCGGTTACATGGACCATGAAGGTGATGATTTTGACTTCACGGAAAGGACAGGAGTTTCCAATTGTGAGATGCCCGCTTACATAGGCACAAGGTTCCCTGATCCTAAGGTGAATTCAACCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGAATATGTGGAAGTGTGAAAATGATAACCCAATCAAGCATGTAGGATATGGTGCAGACTCTGAACCTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGCAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCATGTACATCGTTTGAAAGATCGTTTGTTGATGCCGATAGGTCTTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTAACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGACCTACTGTTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCATGTGTGGGAAAATGAAAAAATGACGCCAAACACGAAGGTTAATAAGATGGAGTTATTTACTGATACAAGTGATGGAATGCGCTCCATTCTCAGTGGAGGGATATCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTGTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCACCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGTACAGGTCAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATACCTTACCAAAATCCTGCTCACAGTGATGATGTTGAGTTCAATGTAGTTCAAGAGATGGAACAAAAACCTGGAACTTTTCCTGCTGTTGGATCTCAGGGTAATGATTTACTGAAGTGTGAGGATAGTGTTACATTCACAACGACTGGGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGAGAGATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACGTCAATTGTCAGTGGGAAGCTGTATAATTGTGTTATGACTGAAGGAGAGGGAAAATCAATTGAACATAAAAGTATTGATTCTCAGCTTTCAAAAGGAAGTACCGACAGATCCAATATGGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTAAGTCGATCAGCAGAGCTTGGGAATTCCCTCAACACATTACAATCTTCTAGAGGTGTTTATACTCAGTCTTCTATGGTGGGAGTTATGAGACCTAAGGCGCGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCGGATGGACTGTTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCTAGTTTGTACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTGCATTGGTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGACTGGCCTAGTGAATAATGAATCTAATATGGTTCAGGATTTGTCTTGTATAACTCCAAACAAAAACATGAATTTGTTAGTGCATGTAAAAGGAAGGCCGTCTGCTGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGTCCTTCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACTCTACGATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGGGCAAAGCGGAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCAATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGAACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTAGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAGACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCATTCCGGAGGATACTACTGGTGGCCTCGGCAGCTCATCTTCTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAAGCAAAATGTGTTAGAGAGAAGCTCTAATGATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTCGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTCATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCTTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3741 0.4103 MMADEGLGYACFLDGDGHAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDDFDFTERTGVSNCEMPAYIGTRFPDPKVNSTNVAVCGDSLKLNMWKCENDNPIKHVGYGADSEPASHGSIIENIDVKFDDYETYTQEITGPSGKQENDSCTSFERSFVDADRSSYVATSTDSSICQGSNVPNDFSNYYPSFNIYQGMDDRPTVANASDCLFNGAYPHVWENEKMTPNTKVNKMELFTDTSDGMRSILSGGISFQDNQYTFQDSKYASCFPGNVLFEDSAPVQHSTCASYISSTGQSLNVKTDRDGLIIPYQNPAHSDDVEFNVVQEMEQKPGTFPAVGSQGNDLLKCEDSVTFTTTGKAKYYQDAIGGAANYFPGIMRDLNLKPFDKSLYNLQTSIVSGKLYNCVMTEGEGKSIEHKSIDSQLSKGSTDRSNMEDESDVCIIEDISHPAPVSRSAELGNSLNTLQSSRGVYTQSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPALVNKCNIAKKSELETLNLDADDDQLPETGLVNNESNMVQDLSCITPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKSSKKGLDSTMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSRPQCCAPQSNSVHSIPEDTTGGLGSSSSDRMKSSNECPEKQNVLERSSNDSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00020 1246 Gene3D - 540 633 IPR038718 -
Vium2356g00020 1246 MobiDBLite consensus disorder prediction 747 767 - -
Vium2356g00020 1246 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 405 938 - -
Vium2356g00020 1246 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1075 1241 IPR001650 -
Vium2356g00020 1246 MobiDBLite consensus disorder prediction 747 782 - -
Vium2356g00020 1246 CDD SF2_C_SNF 1090 1198 - -
Vium2356g00020 1246 Gene3D - 1060 1241 IPR027417 -
Vium2356g00020 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 892 IPR027417 -
Vium2356g00020 1246 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 774 904 - -
Vium2356g00020 1246 SUPERFAMILY RING/U-box 939 979 - -
Vium2356g00020 1246 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 664 752 - -
Vium2356g00020 1246 ProSitePatterns Zinc finger RING-type signature. 949 958 IPR017907 -
Vium2356g00020 1246 SMART ultradead3 567 869 IPR014001 -
Vium2356g00020 1246 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 854 IPR014001 -
Vium2356g00020 1246 Gene3D - 657 755 IPR038718 -
Vium2356g00020 1246 Gene3D - 777 893 IPR038718 -
Vium2356g00020 1246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 936 1025 IPR013083 -
Vium2356g00020 1246 Pfam SNF2-related domain 591 941 IPR000330 GO:0005524|GO:0140658
Vium2356g00020 1246 CDD DEXDc_SHPRH-like 571 892 - -
Vium2356g00020 1246 MobiDBLite consensus disorder prediction 1044 1086 - -
Vium2356g00020 1246 SMART helicmild6 1105 1188 IPR001650 -
Vium2356g00020 1246 Pfam Helicase conserved C-terminal domain 1086 1188 IPR001650 -
Vium2356g00020 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 1226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00020 Vium-Chr2356 114230 123498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00020 461 1245 RAD5 or RAD16-like Gene Family AT1G61140 54.328 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2356g00020 SNF2_N 5.2e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00020 - - gmx:100805307 1322.76