Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2356g00012 ATGACAAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCACCTGCGTCGTGATTCTCGCAGGGACTTTCTGTGTTGGAGATACCGATATGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAATTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTCTGCCCCCTACTCTGCGGAGCTTGTCTCTCATGGGAAATCGATTAAATGGAAGCATTCCGGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCAAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTATAACATTGCACTTGCAAAATAATCAACTTTCGGGGACCCTTTACGTGTTGCAAGACCTGCCACTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCGTTTAATACTACCATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCCCCCAAGAATCGCCTTGGAAAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGCATCATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTATTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAAAGGAGGCCGGAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTCAGTTTTTGGAGCAACTAACCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGAAGCACAAATTCGATTCCTAAGGTTCAAGATGAAGGAGACATACATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAATGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATCAATCCCGCTACAACTACCAAAGAAACTGAAAAACAAGTTATGACAAATTCCATCGAAATTTATACTATTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCGGTTTATCTGGCTGAACTCCCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACACAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATGATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTCGGAGCTGCCAGAGCTTTAGAGTACCTGCATGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGCCTCCTTACTGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTACACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCCCGGCCTCGTGCAGAGCAATTTTTGGTGAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGACCCCTGCTTGAACGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAATTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCTTACGAATGATGTAA 2154 0.4336 MTSTKLELHVGIFVTCVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKSVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLMGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLITLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSPQESPWKVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPEKKNAKKLDDVGVFGGPLNKSACNDSVFGATNQEEKGKCEVPNRSTNSIPKVQDEGDIHVKVVSATSECNNGHQSMNTGGGSKLSPLQPPPKHSFPTISGEKITINPATTTKETEKQVMTNSIEIYTIALLQQYTNNFSQENCIGEGTLGPVYLAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDDQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLNGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLLRMM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2356g00012 717 Gene3D Phosphorylase Kinase; domain 1 401 516 - -
Vium2356g00012 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 717 - -
Vium2356g00012 717 SUPERFAMILY L domain-like 64 227 - -
Vium2356g00012 717 ProSiteProfiles Protein kinase domain profile. 439 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2356g00012 717 MobiDBLite consensus disorder prediction 372 400 - -
Vium2356g00012 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 405 516 - -
Vium2356g00012 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 715 IPR046959 -
Vium2356g00012 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 141 - -
Vium2356g00012 717 Gene3D Transferase(Phosphotransferase) domain 1 517 716 - -
Vium2356g00012 717 SUPERFAMILY Protein kinase-like (PK-like) 418 713 IPR011009 -
Vium2356g00012 717 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Vium2356g00012 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 142 231 - -
Vium2356g00012 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2356g00012 Vium-Chr2356 66315 73168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2356g00012 23 717 Strubbelig Receptor Gene Family AT4G03390 50.536 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium2356g00012 PK_Tyr_Ser-Thr 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2356g00012 - - gmx:100793423 1189.1