LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2356g00012	ATGACAAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCACCTGCGTCGTGATTCTCGCAGGGACTTTCTGTGTTGGAGATACCGATATGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAATTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTCTGCCCCCTACTCTGCGGAGCTTGTCTCTCATGGGAAATCGATTAAATGGAAGCATTCCGGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCAAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTATAACATTGCACTTGCAAAATAATCAACTTTCGGGGACCCTTTACGTGTTGCAAGACCTGCCACTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCGTTTAATACTACCATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCCCCCAAGAATCGCCTTGGAAAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGCATCATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTATTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAAAGGAGGCCGGAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTCAGTTTTTGGAGCAACTAACCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGAAGCACAAATTCGATTCCTAAGGTTCAAGATGAAGGAGACATACATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAATGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATCAATCCCGCTACAACTACCAAAGAAACTGAAAAACAAGTTATGACAAATTCCATCGAAATTTATACTATTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCGGTTTATCTGGCTGAACTCCCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACACAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATGATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTCGGAGCTGCCAGAGCTTTAGAGTACCTGCATGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGCCTCCTTACTGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTACACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCCCGGCCTCGTGCAGAGCAATTTTTGGTGAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGACCCCTGCTTGAACGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAATTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCTTACGAATGATGTAA	2154	0.4336	MTSTKLELHVGIFVTCVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKSVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLMGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLITLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSPQESPWKVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPEKKNAKKLDDVGVFGGPLNKSACNDSVFGATNQEEKGKCEVPNRSTNSIPKVQDEGDIHVKVVSATSECNNGHQSMNTGGGSKLSPLQPPPKHSFPTISGEKITINPATTTKETEKQVMTNSIEIYTIALLQQYTNNFSQENCIGEGTLGPVYLAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDDQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLNGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLLRMM	717

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium2356g00012	717	Gene3D	Phosphorylase Kinase; domain 1	401	516	-	-
Vium2356g00012	717	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	517	717	-	-
Vium2356g00012	717	SUPERFAMILY	L domain-like	64	227	-	-
Vium2356g00012	717	ProSiteProfiles	Protein kinase domain profile.	439	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium2356g00012	717	MobiDBLite	consensus disorder prediction	372	400	-	-
Vium2356g00012	717	FunFam	Protein STRUBBELIG-RECEPTOR FAMILY 8	405	516	-	-
Vium2356g00012	717	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	21	715	IPR046959	-
Vium2356g00012	717	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 3	30	141	-	-
Vium2356g00012	717	Gene3D	Transferase(Phosphotransferase) domain 1	517	716	-	-
Vium2356g00012	717	SUPERFAMILY	Protein kinase-like (PK-like)	418	713	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2356g00012	Vium-Chr2356	66315	73168	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2356g00012	23	717	Strubbelig Receptor Gene Family	AT4G03390	50.536	0.0	634

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Vium2356g00012		PK_Tyr_Ser-Thr	3.3e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2356g00012	-		-	gmx:100793423	1189.1

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